HsaINT0061442 @ hg19
Intron Retention
Gene
ENSG00000148343 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:23621]
Coordinates
chr9:131812106-131821550:+
Coord C1 exon
chr9:131812106-131812242
Coord A exon
chr9:131812243-131821432
Coord C2 exon
chr9:131821433-131821550
Length
9190 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GGTCCTTGTTTTTATGGCAGCCA
3' ss Score
4.62
Exon sequences
Seq C1 exon
GCATGGAGCTGTTTGAGGAAGCTCTGCAGAAGTGGGAGCAGGCACTAAGCGTGGGCCAGCGGGGGGACAGCGGCAGCACCCCCATGCCCAGGGACGGCCTCCGGAACCCAGAGACTGCATCAGAGCCACTGTCTGAG
Seq A exon
GTAGGTGGTCTTCTGCATCCCCCTACGCCCATGGGATAAAGTTGGCAGCACAGGAGAGGGGCGGCCACACCTTGGGAGGCAGGCAGTCTCCTGTCCTCTGAGACTGCTGATTTCCCTCTATGAGGGTGTCTTGATGTGAAACAAAACAATTCATGTCACGTGCTCAGCACAATGCCCGGCGCTTGGTAAAAACAGCCGTACTGAGACTCACACCCGCCTCGACCCTGTGAAGGGCAACGTGTGGTCCTGAAAGGCTGGAAGGGAAGGCGCCTCTGTTGAGGGTTGGCTGCATTGCCTGGCCTTTGTTTTGTTTTGTTTTGTTTTGTTTTTGAGATGGAGTCTCGCTCTGTTGCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACCTTCACCTGCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCTGCGTAGCTGGGATTATAGGCGCCCGCCACCACATTCAGGTAATTTTTGTATTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTTGAACTCTTGACCTCATGATCCACCCTCCCTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCATCGTACCCAGCTGTTTTTTTTTTTTTTTTGAAATGGAGTCTTGCACTGTCACTCTGGCTGGAGTGCAGTGGCGCAATCTTGGCTCTCCGTAACCTCCGCCTCCTGGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCTGCCACCACACCCAGCTAATTTTTTGTGTTTTTAGTAGAGACGGGGTTTCACCACATTGGCCAGGCTGGTCTTGAACTCTTGACCTCGTGATCCGCCTGCCTTGGCTTCCCAAAGTGGTGAGATTACAGGTGTGAGCCACTGCACCCTTTTTTTCTTTTTTTTTTTCCTTTGAGACAGAGTTTCGCTCTTGTTGCCCAGGCTGGAGTGCAATGGTGCGATCTTGGCTCACTGCAACCTCCGCCTCCCGGGTTTAAGCGATTCTTCTGTCTCAGCCTCCCAAGTAGCTGGGATTATAGGCGCATGCCACCCCATGTGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTCATCGTATTGGTCAGGCTGGTCTCGAACTCCTGACCTCAGGTGATCTTGACCTCAGGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCTACCGCGCCTGGGCTTTTTTTTCTTTAATACACTTTTTTGGGGACTTTTTGGGCAACATCCAAGTTTTCAACAGTGAATTATTTATTTATTTATTTATTTATTTATTTATTTTTTTTTTTGGAGACGGAGTCTCACTCTGTTGCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCAGTGCAACCTCCGCTTCCTGGGTTCAAGAGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGGTGTGCACCACCACGCCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGAATGATCTCCATCTCTTGACCTCATGATCCGCCCGCCTTGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCGTGCCTGGCTTATTTATTTATTTATTTATTATTTTATTATTTTTTTTTAAGACGGAGTCTTGCTCTGCCGCCCAGGCTGGAGGTGCAGTGGCGTGATCTCGGCTCACTGCAAGCTCTGCCTCCCAGGTTTACGCCATTCTCTTGCCTCAGCCTCCCCAGTAGCTGGGACTACAGGTGCCTGCCACCATGCCCGGCTAATTTTTTGTATTTTTTAGTAGAGACGGGGTTTCACCATGTTAGCCAGGATGTAATTAATTAATTAATTAATTAATTAATTAGAGACGGAGTCTCACTCTGTTGCCCAGGCTGGTGTCCAGTGGTGCGATCTCGACTCACTGCAAGCTCTGCCTCCTGGGTTCACGCCACTCTCCTGCCTCAGCCTCTGGAGTAGCTGGGACTACAGGTGCCTACCACCACGCCCAGCTAATTTTTTTGTATTTTTAGCAGAGACAGGGTTTCACTGTGTTAGCCAGGATGGGCTTGATCTCCTGACCTCGTGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTATAGGCGTGAGCCACCGCGCCCAGCCTGTAATTTATTTATTTTTAAGGTGTGGCCTCACTCTGTTTTCCAGGCTGGAGTGCAGTGGCGTGATCTTGGCTCACTGCAGCCTCCACCTCCTGGGTTCAAGCGATTCTGTCTCAGCCTCCTGAGAAGCCAGAGTCAGAGGTGCCTGCCAGCACGCCCGGCTAATTTTTGTATTTTTAGTAGAGATGGGGTTTTACCATGTTGGCCAGGGTGGTCTCGAACTCCTAACTTCAAGTGATCCACCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCTTGAGCCACCACACCCAGCCTACAGTGAATATTTATTATTGCAATATCAGGAAAGGAAAATGAAGTTAAAAGGCTAAAATTTAAATTTTTGTGGCCAGGCACGGTGCCTCACACCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGAGGACCAGTTGAGCCCAGGAATTTGAGGGGATGGGGCCACTTTTGGCAGCGGAGGTAGAAGGAGGAGGGAGGATTTCTCTGCCTATTCCTCCCTCACCCTTGCCTTCATTCCTCTACCCGTGTGTCCCATTGGCCGAGAGCCAGCTGGCAGGGGGACCTGGGAAACAGGTTGCAGAACAAGGGGAGGGCTGTGTCTGGCACAGCTGGTAACAAGTTGAAGGTGTCCATGCTCTCTGTCCCTGCTGGGGCGTGAGCTCAGGATGTGAAGGTCAGGGAAATACCTGAGGTTTGAAGTGACTCAAACCCTTGAGTGCCTGCAGTTGCAGCTGCGTCAGGTCCTGTCTGCGAGTCGGCAGGGAACGGGCACCTGTAGGAGTGTGTTGGTGAGGGGGACTCAAGGGAGGTAGCTTTATTTCCCAAATTGTATTTCTTGCTAAAAACTATATCTGAAAATGATAGAATTTGCATTGTTTTCCTTGTTGTGAAAGCAATTACATATTCCTTATCAAATAATGAAAAGTACAGAAATAGGAAAGAGAAGGGGGTGTAAAATAGTCTGATCCCAGACTCTGATCAGACAGCCCATGGTTGTGTGGTGTGGCACCCTCGGCCTCCTGGAGCACTGGCGCTCTGTGGGGGCGCCAGCACCAGCTGTTCAGGCCTGGTCCATAGTAGGTGCTCAGTTAATGATCTGTGGCATATCTACATGCCAGGACGCCTACAACCTTACAATCCTACAAGGGGTGCCTGCAGCCCTTCATCCAGGCATCACCACTTTCTATTCCTTCAGGCATTTTTTTCTGTCTATTGCTATAATTTTTTTTTTTTTTGAGACGGAGTTTCGCTTTTGTTGCCCAGGCTGGAGTGCAGTGGCGCAATCTTGGCTCACTGCAACTTCTGTCTCCCAGGTTCAAGCGATTCTCCTGCCTCAGCCTCCCGAGTAGTTTGGATTACAGGCATGTGTCACCACGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTGGCCAGGCTGGTTTCTATCTCCTGACCTCAGGTGATCCGCCCGCCTCGGCCTCGCAACGTGCTGAGATTACAGGCATGAGCCACTGCGCCTGGCCTATTGCTATAATTTTTAAACAGTTTTATTGAAATATAGGCTGGGCACAGTGGCTTACACTTGTAATTCCAATACTTTGGAAAGCTGAGGTGGGAGGATTGTTTGAGCCAGTGAGGGAGAAGTTCAAGACCAACCTGGGCAACATAGTGAGACTCTGTCTCAAAAAAATTTTTTCTTGAGACGGGGTCTTACTCTGCTGCCCAGGCTGGAGTGCAGTGGCGTGACCAATTAGCTGGGTGTCATGGCATGTTCCTGTGGTCCCAGCTACTCGGGAGGCTGAGGTGGGAGGATCACCTGAGCCCAGGAGTTCAAGGCTGCAGTGAGCTATGATTGTGCCACTGCACTCCAGCTTGGGCAACCCTGTCTCTACAAAAAGAAAAAGAAAAGATATAATTCACATAGCATCTAAACTGTACAATTGAGTAGCTTTTGGTATATTCACAAAATTGTGTATCTATTATCACAATCAGTTTTGGAGCATTTTTATCCCAATAAGAAACCCCTGGTCCAGCATGGTGGCTCATACCTGTAATCCCAGTGCTTTGGAAGGCCGAGGTGGAGGAAAATTTCTTGAGCCCAGAAATTCAAGACCAGCCTGGGCAGCATAGTGAGAGCCCATCTCTGCAAAAAATTAAAAAGTTAGTTGGGCATGGTGGCGCACACCATGTGGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGTAGGATCCCTTGAGCCCAGAAGGTCAAGGCTGCAGTAAGCCATGATTGTGCCACTGCATTCCAGCCTCTGCAATAGAGTGAGACCCTGTCTCAACAACAACAAAGAAACAACAACAAAGAAACCCCATGTACTTTGGCCATTCCCTTCACATTCCTTCATTTCCCCCCAGCTCTAGGCAACCACAAATCTATTTTCTCTACATCTGGATTTGCCTATCACGGACGTTTCTAGAAATGGGATCACAGAATATGTGGCCTTTTGCGACTGCCTCCTTTCACATAGCAGAGTGCTTCCAAGGTTCATCTGTGTTGCAGCATGAATCACTGTTTTGTTTCTGTTGTATAGATGGACCACATTTTGTTTATTTGTTCATCAGTTGGTAGATATTTGGGTTGCTTCCATTTTTTGGCTCTTATGAATAATGCTGCTGTGAACATTCATGTACAGGTTTTTGTGTGGACATATGTTTTCATTTCTCTTGGGTATATACCTAGGAGTGAAATTGCGGGGATCACATGATAATTCCATGTTTAACTTTTTTTTAAGACGGAGTCTCGCTCTGTCGCCCTGGCTGGCGTGCAGTGGCACAATCTCGGCTCACCACAACCTCCACCCCCCAGGTTCAAACGATTCTCCTGCCTCAACCTCCTAAGTAGCTGGGATTACAGGCGCACGTCACCACGCCTGGCTAATTTTTGTATTTTTTTTCTTTTCTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAGTTCAGTGGCGCGATCTTGGCTCACTGCAAGCTCTGCCTCCTGAGTTCATACCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCCAGCCACTATGCCCAGCTAATTTTTATATTTTTAGTAGAGACGGGGTTTCTGCGTGTTGGCTAGGCTGGTCTTGAACTCCTGACCTCAGGTGATCCACCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAAGTGTGAGCCGCTGTGCCCAGCCAATTTGTGTATATTTTATGGTAGTAAATGATAAAGACTAGTATCTACATATATTTTATGTATTTGTGACGTATCTTTTTCATAATTTTTTCAGTATCTCTAGGCTAAGTGGGTTCATCTCTGAGGTTTTTCAAATTGTCATAAATTTCCAAAAAATTCTTCTATATACTTATTGAAAAATATCTGGCCAGGGGCCTCGCGCGGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGATGAGGTGGGCGATCACGAGGTCAGGAGATCAAGACCATCCTGGCTAACACAGTGAAACCCCGTCTCTACTAAAAATACAAAAAATTAGCCGGGCGTAGTGGCGGGCACCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATGGCATGAACCTGGGAGGCGGAGCCTGCAGTGAGCTGAGATTGCACCACTGCACTCCAGCCTGGGCGACAGAGCCAGACTCCATCTGAAAAAAAAAAAAAAAATTTGGCCGGGTGCAGTAGCTCACACCTGTAGTCCCAACACTTAGGAGACCAAGGTGGGAGGATCACTTGAGTCTAGGAATTCAAGACCAGCCTGGGCAACATGGTGAGATCCTGTCTCTACAATAAATACAAAAATATTTGCCGAGCGTGGTGGTGGGCACCTGTAGCCCCAGCTACTCAGGAGGCTGAGTTGGGAGGATTGCCTGAGCCCATGATCTCATCACTGCACTGTAGCATGGGCAACAGAGCAAGACCCTGTCTCAAGAAAAAAAAAAAAAAAAAAAACTTATGTTGTTCAAGGGTCACATGTGTATTATTAAAATTAATTTTGCCCATTACTTTGTGCTATTTATTGTGGTCTGTAGCAAACATTAAATGTTGCACGTGGCTTTCCACTGGACAGCACTGCTCTAGAGCCACAGACACCTGTATTCAGTTTGTGGCACCACTAGTTCTACACTGTGACCTCAGGGAAATAATTCCCCCTTCCGAGCCTTGTCTTAGTTTCTCTGTCTGTCAAGGGAAATAAGAGTGTCTTTCTCCTAAGATCTCAGGGATAACTTAAAGAACTACAGTAGGCAATGCACGTCACAGAAGACTGGCCCATGGTGGCCACCAGTAAGGGTAGCTTTTAGAATAAATACTGTAATAATGACTTTTTTTTTTTTTTTTAAGACGGACTCCTGCTCTGTTGCCCAGGCTGAAGTGCAGTGGCACAATCTCGGCTCACTGCTACCTCCACTTCCTGGGTTCAAGCGATTCTCCTGCCTCAGTCTCCCAAGTCGCTGGAATTACAGGCGCACACCACCAAGCCCAGCTAATTTTTGTGTTTTTAGTAGAGACGGGTTTTCACCAAGTAGACCAGGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCCGCCTCGCCCCCCAAAGTGCTGGGATTACAGGCATGAGCCACTGCACCCAGCTGAGCTCAGGAGTTCAAAACCAGCCTGGGCAACATGGTGAAACCCCACCTTTACTAAAAATACAAAAATTAGCCGGGTGTGGCGGTACGTGCCTATGGTCCCAAGTACTCAGGAGGGTGAGGTGGGAGAATTGCTTGAACCTGGGAGTTGGAAGTTGCAGTGAACCGAGATCATGCCACTGCATTCCAGCCTGGGCAACAGAACGAGACCCCATCTCAAAAAAGAAAAAAAGAAAGGACAGTCCTGATGAAAATCCTGACTGCATTTGCAAAAAACAGTAGAGTTAGTCTATACCTTCCTGCCTTAAATCTAGTGCTCACTTCTCTTCCATACTAATAAATGTCCTTTGTGGCATTTTTTTTCCAGAATAGGGCACTTTCATTTGCATTAGAAACCTATTCAGGCAGATATCCTTTCTCCTCAATGATTTTCTTTTTTAAAATTAAATATATATGTGTATTTTATATATATAAATTTTGTTGTTGTTGTTGTTGAGATGGAGTCTCGCTCTGTTGCCCAGGCTGGAGTGCAGTGGCTCTCGATCTCGGCTCACTGCAAGCTCCCCCTCCCGGGTTCATGCCATCCTCCTGTCTCAGCCTCCCAAGTAGCTGGGACTACAGGCGCCCGCCACCATGCCCGGCTGATTTTTTGTATTTTTAGTAGACGGGGTTTCACCATGTCAGCCAGGATGGTCTCGATCTCCTGACCTCGTGATCCCCCTGACTTGGACTCCCAAAGTGCTGGGATTACTGGTGTGAGCCATTGTGCCTGGCCCAATGATTTCCTTTCATTTATTTATTTATTTTGAGACAGAGTCTCGCTCTGTCACCAAGGCTGGAGTGCAGTGGCACCATTATGGCTCACTGCAACCTCAACCTCCCTGGGCTCACATGATCCTCCTACCTCAGCCTCCTGAGTAGCTGGGACTACAGGCACACGCCACCACGCCCACCTAATTTTTGTATTTTTTGTAGAGATAGGGTCTTTCCATGTTGCCTAGGCTGGTCTCAAACTTCTGGGCTCAAGGGATCCTCCTGCCTCTGCCTTCCAAAGTGCTGGGATTATAGGTGTGAGCCACCTCACCCGGTCCATTTTTCTTCTTTATGATTTCTTTAATAACATTTTCTTTTCTCTGGCTTAGTTTGGTATAAGGATACAGAATATAATACATAGAACATACAAAATATGTGTTAATCGACTACATTCTTATTAAGACTTCTGGTCAACAATAGGTTATTAGTAGTTAATAACCTACTAATAACTCCCCCTACTTTTAGAGGAGTCAAAAGTTATATGTGGGCTGGGCACGGTGGCTCACACCTCTAATCCTAGCACTTTGGGAGGCTGAGGCAGGAGGATTGCATGAACCCATACGTTTGAAACCAGCCTGGGCAATGTGGCAAAACCCTGTATCTACCAAAGATATATACAGAAGTTAGCCAGGTATGGTGATGTATGCCTGTAGTGTCCTAGCTACTAGGGAAGCAGAGACGGAAGGATCACTTGAACTCAGGAGGTTGAGATTGTGGTTAGATGTGATTGCGCCACTGCACTGCGGGCTGGGTGACAGAACGAGACCTTGTCTCAAAAAAAAAAAAAAAAAAGTTTTTTATGTAGATTTTCAACTATGTGGGCACAGGGGTGAGTCAGTTACCATAAGTCCACAATTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTGAGACGGAGTCCTGTTCTGTCGCCCAGGCTAGAGTGCAATGGCGCGATCTTGGCTCACTGCAACCTCTGCCTCCCAGGTTCAAGCAATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGACTATAGACACCCGCCACCACACCCGGCTAATTTTTGTATTTTTAGTAGAGATATGGTTTCATCATGTTGGTCAGGCTGGTCTCGAACTCCTGACCTTGTGATCTGCCCACCTCGGCCACCCAAAATGCTGGGATTACAGGCGTGAGCCACTGTGCCTGGCAACCTAAGTCCACAGTTTTCAAGGGTCAGCTGTACTTCATGTAACCTGGTATGTCCAGTATGTGATCATTTCAGCATGTAATCAACAGAAAAGATTCCTGAGACAGTCTATGCTTTTTGGTGCCGTGTTTGAAATCTGGTGTGTGTTTACACTCTGGGACTGTCCAGGTTTCCAGTGCTCAGCTGCCAGAAGTGGCTGGTGGCTCCTCTATCGAGCAGTGAAGTTTTGGAGTTTATGTGCTTAGCTGCTGGGTCCTAGAGCTCCTCCCCTTTCCCCAGGGACCTGGGGGTGAGGGAAGGGGCCATTTTCATCGGGAGCTTTGAGGGTCTGGGTTGAGGGTCCTTGTTTTTATGGCAG
Seq C2 exon
CCAGAGTCACAGCGGAAGGAGTTTGCAGAGAAGCTGGAGTCCCTGCTGCACCGTGCCTACCACCTGCAGGAGGAGTTCGGCTCCACCTTCCCCGCAGACAGCATGCTGCTAGACCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148343-FAM73B:NM_032809:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.701 A=NA C2=0.361
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(20.8=100)
A:
NA
C2:
PF102654=DUF2217=FE(12.5=100)
Main Inclusion Isoform:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)