GgaINT1012989 @ galGal4
Intron Retention
Gene
ENSGALG00000004490 | FAM73B
Description
family with sequence similarity 73, member B [Source:HGNC Symbol;Acc:HGNC:23621]
Coordinates
chr17:5464807-5466545:+
Coord C1 exon
chr17:5464807-5464943
Coord A exon
chr17:5464944-5466427
Coord C2 exon
chr17:5466428-5466545
Length
1484 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
CTATGGCATTTATGTTCAAGGAG
3' ss Score
4.29
Exon sequences
Seq C1 exon
GCATGGAGCTGTTTGAGGAGGCCCTGCAGAAGTGGGAACAGGCGCTGACCATCAGGCAGCGGGACAGTGCTAGTTCCAGCACTCCTGTGCCCTGGGACAGCAAGAAACACCAAGAGAACTTGTCTGAGCATGCAGAG
Seq A exon
GTAGGTCCCCACTTTTCTCTTGCATTTGACAGCTGGGAAACATGGCAAAAGGCCAGGCAGAATGCCAGTAGTAGTAGCTAATAGGATAGAAGAAGAGCAAATTGAGGGCAAAGCTGGGCCAGACTGTTTAAGAGCTGTCTACATCTGTGGCTTCCTTATGCAGTGTGAGTGGGTGATTCTTTATTTTTTTCTTTTTTTTTTCTTTCTAATAAGTCTCTCCCCCTCATTCCTCAGCTTTTCTGCCCACCTTCCAGATCATGTCAGTCACTGTCATGCAAGTGTTCAAGCAGCAGAGACTGCCGTATGAAAAGACTGTAATAAATGCAGTGCCTGAGAGGAAGAAAGAGCTTTTTGCCTGGCAGTGTTGTGTCTGTAACTCTTTAACACATTGAAAGTGGAGAGCTTGGTGGTCACTCTCACTTCCTAGGGGGGTGAGTGCAGAAGCAGGATGCAGCTGCCTGTGTGTATTAATGACTAAAACAAAGTAGCTGCTAAGAATGTCTCTGTTCACAGAACAAGTGGAGCGGGGAGATGTGTAACTTGTTCCACCTACAGAACAAGTATTTTAGGACAACATCTTGCCTTGGACCTGATGACTATGCTGGGCAGACCTCTGATAAAAGAGGAGATCCAAACTAAGAAGGCTTCATGATGACTGACTGCGAAGCTAAACAGAGCAGCTGTAGCTCAGGGTTGTGAAAGGAGCTAAACTCCAAACATTCCAGGAGTTCTCAGTGGTAAAGTGTTTCAAGGCTGTCATAAATAGGGTCTCATGTAGTAAGTGTATTGGATATTTGCCTTCTCCTGTGGGTATTTATGCACATCAAGTCTGGGTTCTTGCTGTCACTTCTTGAAGTGTCCAATACAATCATAGAAAGGCTTGGGTTGGAAGGGACCCCAAGGATCAACAGGTTCCACCCCCCTGCCACTGGCAGGGCCACCAACCTCCATAGTGTTTCTGCAAACAAATCCAACATCAAAATAGATCCTGTGCTTCTCGTTAATGCTTCTATCTACTGGGTGACATACTCATGCAGACACAGGGCATGAAGGTGTGATGCCGTGTCTTATTTTTCTTTTTTCCTTTTTGTCTTCTTGTGCTTATAGCACGCTTTGCTTGTGCTCAGCACCTTAATCCAAGGACTATTATGCTGTTATCCAGTTCTGGATACACTTCTGTATTCAACACAGGTTCTCTGATAGATGTTTCAAGAGGGAATCAGAAGTCAGGAGAGTTAAGTGATCTGTAACTTGTAAAAATACCTGTTTCTCTGGATAGCAGATTAAAGTTCTTTCTTTTTTAACAGGAATACAAAATTGCGAAGCTAAAAATGCCAGAAGATTTGAATAGGCTCTATAGAAGCGTTCCTCCCCTTACAGTGTTAGCTGTATTGTAGGATTGAGTTCTGTCTCTCTCTTTTTCTTCCACTCTCTCTCTCTCTCACGTAATTTAATCTGTAACTTCTATGGCATTTATGTTCAAG
Seq C2 exon
GAGGAGTCCCACAAAAGAGAGTTTGCTGAGAAGTTGGAGTCCCTCTTGCACCGAGCCTACCACCTCCAGGAGGAGTTTGGGTCTTCACTTCCATCAGACAGCATGCTGCTGGATCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004490:ENSGALT00000007150:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.630 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(8.3=100)
A:
NA
C2:
PF102654=DUF2217=FE(7.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGCTGTTTGAGGAGGC
R:
CCAGATCCAGCAGCATGC
Band lengths:
254-1738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]