MmuINT0062072 @ mm10
Intron Retention
Gene
ENSMUSG00000026858 | Miga2
Description
mitoguardin 2 [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30371533-30375790:+
Coord C1 exon
chr2:30371533-30371669
Coord A exon
chr2:30371670-30375672
Coord C2 exon
chr2:30375673-30375790
Length
4003 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
AGGTCATTGTTTTGTCATAGCCA
3' ss Score
4.65
Exon sequences
Seq C1 exon
GCATGGAGCTGTTTGAGGAAGCCCTGCAGAAATGGGAGCAGGCACTGAGTGTGGGCCAGAGAGGGGATGGAGGCAGCACCCCCACACCAGGCGACAGCCTCCAGAACCCAGACACCGCATCAGAAGCACTGTCAGAG
Seq A exon
GTAGGTGGTGTTCCCCAGTCACTGCGAACTTGGCCAGGTGACGGCTGATTGAGTGTGCCTCTCCCAGGGCACTCACTGGGTTCCCGTCCACAAAAGTGCCACTTAGAATGAATATAGTAGCTCGAGTGCGTGCTTGATGCTGTTGCATTGGTGAGCGCTTGGTGAGCAAGTCCCACTTTGATAATCACTCTTCTCAGCTCTGTTCAGGGCCTGGGGGATATTGGGGGATGGTGTGGGTGTTGATGCAGGACTATAGGAGATGGACCTCTATTCTAGTGACTGGATTCTGGGGCCTTTGGGTTTTGTTTATGGTATTTTGGGGGGGGGGAGAACATCACTTACGTTTTTTGATTGTAATTTCATACTCTTATTTATTTGTAAGATTTTTTTACTTATTTTTATTTATTTTTTTATTTGTTTCCCTGCATGTCTATATACCATGTTGGTGCCCACAGAGTCCACAAGATGGTGTTGGGTCCCCTAGAACTGGAATTACAGGTGTGAGCCACCAAATGGGCACTGGGAACCATACCCAGGTCCTTTGGAAGAACAGCAAGTACTCTTTTAACAGCTGAGCCATCTCTCTAGCCGTCCCCTCATTCTCTGTTATTTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACTCAGCTGACCTCGAACTCAGAGATCCACCTGCCTATGCCTCCCAGTGCTGGGATTAAAAGTGTGTGCCACCATGTCCATTTGGTGACCATTTTTAGCACATGTAGTTTCCTGTGGAAAGTTCTGGAGAGAAAGGTAAACAGACTTTCATTAGGTTGACAGTACTTTTCTCTTCTGTTTGTTTCAAATAAAAAGACGTAAATCAAAAACTTGGGAATTGCTGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTCGAGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTCCAGGACAGCCAGAGAAACCCTGTCTCGAAAAAACACAAAACAAAATAAATAAAAAACCCTTGGGAATTAAGCTGAGAGCCTTGTATGGGCAGGCACACAAGACGTGTGCATAGAACAGGCCTTTATATTTTTTTATTTTTATTTACTTTTTTTGTTGTTGTTTGTTTTTTCCAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTAGACCTCACTCTGTAGACCAGACTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTTGAACTCAGAACCTCTGGAAAAGGCGTGCGCCACCATGCCCAGCTTTTTTCAGTCTTTCCATGGTGATGTTGAGTGGTTTTGTTTTGTTTTGAGACAGAGCCTCTCTACATAGTCCTGACTGCTTGTCCTAGAGCTGTAGTCCATACTGGCCTTGAACTCAGAGAGATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGTTTAAAGGCATGGAGATTTTTTTCACATTCTTCATGGCATCCATTGAGACACAGAAGATACTCTTAAGTTCTGGGTTGGAGGAACAGCTTAGCTGTAGCTTGTATATCGGGCCTCAGGCCCCTGGGTTTCATCCCCAGCTCCACAGAAGCAGGGATCTGACAGCAATGCCACACGTGGGAGGTACAGGCAACAGGACCAGGAGTTTCAGGGTACAGCCGGGCGGAGGTGACACACCCCTTCAATCAAAGCACTTAGGAGGCAGAGGTAGGCGGATCCCTGAGTTGGAGGCCAGCTTGGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCATGTGTCAAAAAATAAAACAAAGTGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCATCTGCTCTTCCAGAGGTCCCGAGTTTAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTACTCATATACATAAAATAAATAAAATAAAATAAAATAAAACAGAAGTTTGAGGTTACACAGTGTGGGGCCAGGCTGGACTAAATGAGACCCTGTCTCAGAACTAAGTTTTTTAAAACATTCTGAAATTTATCACATCTGCTATTCTTGAGTTGGTTGAGCTTCTGTGCTAAGTCCCTGCAGCCTTAACCACTCAAAGCTACTTCCCAGAGCTCTGACAGACATCCTCAGGAGCTGCCAGTCATGCAGGAGAGAGTTCTGAGGGCTGGTCCAGGTCTCTGTCCCGGGACACTTCACCACCTTGAATTATCTCTGTCCCTGAGAGAAGCTTTGAGGCTGAACAGCAAGGTCCAGGGTGAGACCTCAGCCATGGCCGCCTCTTAACCTCTTCTGGCCTTTTCTCGGCCTTAATTGGTCCTCATCTGTTTCCTCCCTGGGCTCTGGTTACTTTAGCAACAGCTCTACTCTGGTTACCTCCACCTCCATGGAGAAAGTAGTCAGGCCTCACCCTGGGACCCAAACCCAAGAGCCCCTGCGCGGAGAGAGCACCACCCAACATCCATGCAGGGGCTGGGGCTGGAGGTCAAAAGTCACACAGAGGTCACAGGAGGCTGTGCTCCACACCAGCTCCTCCCCTCCACCTCTAGTGAAGCCCACCTGTGTCACCTTGCAACGACTCTCCTGTCACCTAGACCTTCCCAGGACCGTATGTTCTTTGCTGTCCAGCTTGTCACCTGTAGCCTTGACACTCAGGAGGTGGAATGACCCTTGCTTGGTAACCCAGTAACAGCTACTACCATTTGCACCTGAGCCCCAGAAACCCTCTGCACAAGGTGAAGCTTTTGAGTCCCTTCTATAGAGAAGTCCTGGGAGGAGGTCACCATGAAGGGCTTGCCCAGGTACACAGGCCCTGCACTAGGCAGGTTTCAGGGAAAGGCTTGAGTCACTTAGAGACACAATGTTTTCTAGAAAATATGTTCAGCCTGCCAGCCAACAAAAAAAGCAAGCAGGGCCGGGATGTGCCTGCCTAGCATGCAGGAAGCCCTGAGCTCAGCCTTCAGCACCATGTAAAAGCGGGGGAGTGCTATACAACTGTAATCCCAGGATCGGGAGGTCGAGGTCATCTTTGGCTATATAGTGAGTTTGAGGACAGCCTAGGTTCTATCTCAGGGTGGAAACAAGAAAAAATAAATGAGATCAAATTGTTTACTTTTTTTTTTTAATCTTTTTTTTTTTTTTGTCTTTGTTTTTCTGGGTTTCTCTGTGCACCCTGGCTGTCTTGGAACTCTCTCTCTGTAGACCAGGCTGGCTTCAAACTCAGAGATCCTCCTGCCTCTGCCTCCTGAGTGCAGGACTAAAGGCCTGTGCCACCTCTTTCTTTTGAGACAGGGTCTTGCTATGTAGTCCTGGCTACCTGGAACTCACTACCACTGCATGTCCCACATTGGGTGGGTCTCTGCGACTTTGACCCTATTCTTTATAGCCAGCTCTAGGCCAGCCAGGGTTACATAGTCAAACCTAAAGTAAAACTAAAAAGTAATATAGCAAGCCGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGATCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAGTAATATTGCTGGGCACGGTGGCACACAGCTTTAACCCCAGCACTTGGGAGGCAGAGGCGGACATACCCTACTGTGAGTTTGGCCTCAACCTGAGATTTTCTCGTAGGGCTCCCAGATTACAGGTGTGGGGCACGATGCCCTTCTGCCCAGATACTGTGCATGTGTTTCTGGCATCATGGCCTGTGTATGTACAGCACATGTGGCCAGTGCCTCCTGCAATGGGCAATACAAGCCTAGAGTTCTTTTGGACCCAGAGCTGGCTCCATTTCCTCAGGGCCCTACCTGAATGGGGAGTTCTGCAGCTCTGGGTTGAAGGTCATTGTTTTGTCATAG
Seq C2 exon
CCAGAGTCCCAACGAAGGGAGTTTGCTGAGAAGCTGGAGTCCCTGCTGCACCGGGCCTACCACCTGCAGGAAGAGTTTGGCTCTACCTTCCCCTCTGACAGCATGCTGTTGGATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858:ENSMUST00000077977:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.696 A=NA C2=0.225
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(10.1=100)
A:
NA
C2:
PF102654=DUF2217=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types