MmuINT0062072 @ mm9
Intron Retention
Gene
ENSMUSG00000026858 | Fam73b
Description
family with sequence similarity 73, member B [Source:MGI Symbol;Acc:MGI:1922035]
Coordinates
chr2:30227053-30231310:+
Coord C1 exon
chr2:30227053-30227189
Coord A exon
chr2:30227190-30231192
Coord C2 exon
chr2:30231193-30231310
Length
4003 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
AGGTCATTGTTTTGTCATAGCCA
3' ss Score
4.65
Exon sequences
Seq C1 exon
GCATGGAGCTGTTTGAGGAAGCCCTGCAGAAATGGGAGCAGGCACTGAGTGTGGGCCAGAGAGGGGATGGAGGCAGCACCCCCACACCAGGCGACAGCCTCCAGAACCCAGACACCGCATCAGAAGCACTGTCAGAG
Seq A exon
GTAGGTGGTGTTCCCCAGTCACTGCGAACTTGGCCAGGTGACGGCTGATTGAGTGTGCCTCTCCCAGGGCACTCACTGGGTTCCCGTCCACAAAAGTGCCACTTAGAATGAATATAGTAGCTCGAGTGCGTGCTTGATGCTGTTGCATTGGTGAGCGCTTGGTGAGCAAGTCCCACTTTGATAATCACTCTTCTCAGCTCTGTTCAGGGCCTGGGGGATATTGGGGGATGGTGTGGGTGTTGATGCAGGACTATAGGAGATGGACCTCTATTCTAGTGACTGGATTCTGGGGCCTTTGGGTTTTGTTTATGGTATTTTGGGGGGGGGGAGAACATCACTTACGTTTTTTGATTGTAATTTCATACTCTTATTTATTTGTAAGATTTTTTTACTTATTTTTATTTATTTTTTTATTTGTTTCCCTGCATGTCTATATACCATGTTGGTGCCCACAGAGTCCACAAGATGGTGTTGGGTCCCCTAGAACTGGAATTACAGGTGTGAGCCACCAAATGGGCACTGGGAACCATACCCAGGTCCTTTGGAAGAACAGCAAGTACTCTTTTAACAGCTGAGCCATCTCTCTAGCCGTCCCCTCATTCTCTGTTATTTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTCTGTAGACTCAGCTGACCTCGAACTCAGAGATCCACCTGCCTATGCCTCCCAGTGCTGGGATTAAAAGTGTGTGCCACCATGTCCATTTGGTGACCATTTTTAGCACATGTAGTTTCCTGTGGAAAGTTCTGGAGAGAAAGGTAAACAGACTTTCATTAGGTTGACAGTACTTTTCTCTTCTGTTTGTTTCAAATAAAAAGACGTAAATCAAAAACTTGGGAATTGCTGGGCAGTGGTGGCACACGCCTTTAATCCCAGCACTCGAGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAATTCCAGGACAGCCAGAGAAACCCTGTCTCGAAAAAACACAAAACAAAATAAATAAAAAACCCTTGGGAATTAAGCTGAGAGCCTTGTATGGGCAGGCACACAAGACGTGTGCATAGAACAGGCCTTTATATTTTTTTATTTTTATTTACTTTTTTTGTTGTTGTTTGTTTTTTCCAGACAGGGTTTCTCTGTGTAGTCCTGGCTGTCCTAGACCTCACTCTGTAGACCAGACTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTTGAACTCAGAACCTCTGGAAAAGGCGTGCGCCACCATGCCCAGCTTTTTTCAGTCTTTCCATGGTGATGTTGAGTGGTTTTGTTTTGTTTTGAGACAGAGCCTCTCTACATAGTCCTGACTGCTTGTCCTAGAGCTGTAGTCCATACTGGCCTTGAACTCAGAGAGATCCTCCTGCCTCTGCCTCCCAAGTGCTGGGTTTAAAGGCATGGAGATTTTTTTCACATTCTTCATGGCATCCATTGAGACACAGAAGATACTCTTAAGTTCTGGGTTGGAGGAACAGCTTAGCTGTAGCTTGTATATCGGGCCTCAGGCCCCTGGGTTTCATCCCCAGCTCCACAGAAGCAGGGATCTGACAGCAATGCCACACGTGGGAGGTACAGGCAACAGGACCAGGAGTTTCAGGGTACAGCCGGGCGGAGGTGACACACCCCTTCAATCAAAGCACTTAGGAGGCAGAGGTAGGCGGATCCCTGAGTTGGAGGCCAGCTTGGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCATGTGTCAAAAAATAAAACAAAGTGGCTGGAGAGATGGCTCAGTGGTTAAGAGCACCATCTGCTCTTCCAGAGGTCCCGAGTTTAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTACTCATATACATAAAATAAATAAAATAAAATAAAATAAAACAGAAGTTTGAGGTTACACAGTGTGGGGCCAGGCTGGACTAAATGAGACCCTGTCTCAGAACTAAGTTTTTTAAAACATTCTGAAATTTATCACATCTGCTATTCTTGAGTTGGTTGAGCTTCTGTGCTAAGTCCCTGCAGCCTTAACCACTCAAAGCTACTTCCCAGAGCTCTGACAGACATCCTCAGGAGCTGCCAGTCATGCAGGAGAGAGTTCTGAGGGCTGGTCCAGGTCTCTGTCCCGGGACACTTCACCACCTTGAATTATCTCTGTCCCTGAGAGAAGCTTTGAGGCTGAACAGCAAGGTCCAGGGTGAGACCTCAGCCATGGCCGCCTCTTAACCTCTTCTGGCCTTTTCTCGGCCTTAATTGGTCCTCATCTGTTTCCTCCCTGGGCTCTGGTTACTTTAGCAACAGCTCTACTCTGGTTACCTCCACCTCCATGGAGAAAGTAGTCAGGCCTCACCCTGGGACCCAAACCCAAGAGCCCCTGCGCGGAGAGAGCACCACCCAACATCCATGCAGGGGCTGGGGCTGGAGGTCAAAAGTCACACAGAGGTCACAGGAGGCTGTGCTCCACACCAGCTCCTCCCCTCCACCTCTAGTGAAGCCCACCTGTGTCACCTTGCAACGACTCTCCTGTCACCTAGACCTTCCCAGGACCGTATGTTCTTTGCTGTCCAGCTTGTCACCTGTAGCCTTGACACTCAGGAGGTGGAATGACCCTTGCTTGGTAACCCAGTAACAGCTACTACCATTTGCACCTGAGCCCCAGAAACCCTCTGCACAAGGTGAAGCTTTTGAGTCCCTTCTATAGAGAAGTCCTGGGAGGAGGTCACCATGAAGGGCTTGCCCAGGTACACAGGCCCTGCACTAGGCAGGTTTCAGGGAAAGGCTTGAGTCACTTAGAGACACAATGTTTTCTAGAAAATATGTTCAGCCTGCCAGCCAACAAAAAAAGCAAGCAGGGCCGGGATGTGCCTGCCTAGCATGCAGGAAGCCCTGAGCTCAGCCTTCAGCACCATGTAAAAGCGGGGGAGTGCTATACAACTGTAATCCCAGGATCGGGAGGTCGAGGTCATCTTTGGCTATATAGTGAGTTTGAGGACAGCCTAGGTTCTATCTCAGGGTGGAAACAAGAAAAAATAAATGAGATCAAATTGTTTACTTTTTTTTTTTAATCTTTTTTTTTTTTTTGTCTTTGTTTTTCTGGGTTTCTCTGTGCACCCTGGCTGTCTTGGAACTCTCTCTCTGTAGACCAGGCTGGCTTCAAACTCAGAGATCCTCCTGCCTCTGCCTCCTGAGTGCAGGACTAAAGGCCTGTGCCACCTCTTTCTTTTGAGACAGGGTCTTGCTATGTAGTCCTGGCTACCTGGAACTCACTACCACTGCATGTCCCACATTGGGTGGGTCTCTGCGACTTTGACCCTATTCTTTATAGCCAGCTCTAGGCCAGCCAGGGTTACATAGTCAAACCTAAAGTAAAACTAAAAAGTAATATAGCAAGCCGGGCATGGTGGCGCACGCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGATCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCGAAAAACCAAAAAAAAAAAAAAAAGTAATATTGCTGGGCACGGTGGCACACAGCTTTAACCCCAGCACTTGGGAGGCAGAGGCGGACATACCCTACTGTGAGTTTGGCCTCAACCTGAGATTTTCTCGTAGGGCTCCCAGATTACAGGTGTGGGGCACGATGCCCTTCTGCCCAGATACTGTGCATGTGTTTCTGGCATCATGGCCTGTGTATGTACAGCACATGTGGCCAGTGCCTCCTGCAATGGGCAATACAAGCCTAGAGTTCTTTTGGACCCAGAGCTGGCTCCATTTCCTCAGGGCCCTACCTGAATGGGGAGTTCTGCAGCTCTGGGTTGAAGGTCATTGTTTTGTCATAG
Seq C2 exon
CCAGAGTCCCAACGAAGGGAGTTTGCTGAGAAGCTGGAGTCCCTGCTGCACCGGGCCTACCACCTGCAGGAAGAGTTTGGCTCTACCTTCCCCTCTGACAGCATGCTGTTGGATCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026858-Fam73b:NM_175392:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.659 A=NA C2=0.225
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(12.4=100)
A:
NA
C2:
PF102654=DUF2217=FE(10.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: