RnoINT0092530 @ rn6
Intron Retention
Gene
ENSRNOG00000017513 | Miga2
Description
mitoguardin 2 [Source:RGD Symbol;Acc:1310887]
Coordinates
chr3:8937391-8942337:+
Coord C1 exon
chr3:8937391-8937527
Coord A exon
chr3:8937528-8942219
Coord C2 exon
chr3:8942220-8942337
Length
4692 bp
Sequences
Splice sites
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
3' ss Seq
GGTCATTGTTTTTGTCATAGCCA
3' ss Score
4.65
Exon sequences
Seq C1 exon
GCATGGAGCTGTTTGAGGAAGCCCTGCAGAAATGGGAGCAGGCACTGAGTGTGGGTCAGAGAGGGGACGGAGGCAGCACCCCCACACCAGGTGACAGCCTCCAGAACCCAGACACCTCATCTGAAGCACTGTCAGAG
Seq A exon
GTAGGTGGTGTTCCCCGGTCACTGCCCGGGTAATGTGCTTGATGCTGTGACATTGGCGGTAGCTTGGTGAGCAAGGTTTGCTAAACAGACCCTTCTCAGCTCTGTTCAGGGGGTGGGAGATGTAGGTGATGGTGGGTGGGGGTGTTAGTGCAGGACTATAGATGCAGAGGAGATGGGCCTCTGTCCCTAGTTGGCTGGACTCTGGGACCTTTGAGTTTTGTTTATGTTTTTGGGGGGAGAACACCACTCACGTTTTTTTGTAATTTCATAATCTTATTTATTTGTAAGATTTTTTTTTTATGTGTTTCCCTACATGTATGTCTGTATACCGTGCTGGTGCCCACAGAGTCCACTAGAGGGTGTTGGATCCCCTATAACTGGAGTTACAGGTGTGAGCCACCAAATGGGTGCTGGGAACCAAACCTGGGTTCTCGGGAAAAACAGCAAGTGCTTAAAGGCGAGCCATCTCTCCAGCCATCCCCTCTCTGTTATTTTTGAGATGTGGTCTTTCTGGGCTGCTCTGGCTGTCCTGGAACATGCTCTGTAGACCCCGCTGGCCTCAAGCTCGTAGAGATCCCTTGCCTCTGCCACCCAAGTGCTGGGATTAAAGGTACAGTGTCATCATGTCCGTCCACTTTTAGCTCATGTAGTCTACAGTTACCCATAAAGAGTTCTGGAGGGAAAGGTGGAGAGGCTTTCGATGGGTCCCTTTCTCTTCTGTTTGTTTAAAATAAAAAGATGGGGTTGGGGATTTAGCTCCGTGGTAGAGCGCTTGCCTAGCAAGTGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGGAAAAAAAAAAGAAAGAATGAAAGAAAGAAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGGAAGGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAGAGACAGACTAAAATAAAAAGACAGGGGGCTGGAGAGATGGCTCAGCGGTTTAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGGATCCAGTGCTCTCTTCTGGTGTGTCTAAAAAAATATGAAAATACATAAATCAAAATATTAAACTGAGAACTTTGCATGGGCCAAGCACATAGCCGTGTGTGCGTAGGACAGGGTACCATTGGGAGTCGCAGCTTGCTTGGAGCTTTCAATGTAGACCAGGCTGCCGTCAGACTCACAGAGAGTATGTCCGCCTTTGCCTCCCAAGCTGTGTGCCATCGCAACCAGTTATACTACTTTTTATTTTTACTCTAGGTCTGACTGAGTAGCCCTGGTTGGCCTAGAACTGGTTGGACAGGCTAAGCTCAAGCTGGCAGAGACCCTCCTCTGCCTCCCAAGGCTGGGGTTAAGGGCATGTACCACTGTATCTGGTTTGTCAGGCCTTTAAATTTTTTAAAGTTCTGTTTATCTGTTTGTGATGTGTATCTGTATATGGCGCCACAGTGGGCTTGTGGAGGTCAGAGGACAACCCTATAGGAATCAATTCTATTTTTCTGGGGGTTAAACTCAAATTGTCAGCCTTGGTGGCAAGTGCTTTTACTTGCCGAGATATCTCTCTGGGTCATTGTCTTAGGGTTTTACTGCGGGGAGCAGTCACCATGACCAAGGCAATTCTCATAAGGACAACATTTAATTGGGGCTGGCTTACAGGTTCAGAGGTTCAGTTCATTATCATCAAGGCAGGAGAATGGCAGTGTCCAGGCAGGCATGGTGCAGGAGGAGCTGAGAGTTCTACGTCTTCACCTGAAGGCCGCTAGCAGAATACTGGCTTCCAGGGAGCTACGTGAGGGGCTTAAGCCCAGGCCCACAGTGACACACCTACTCCAACAAGGCTACACCTAATAGTGCCACTCACTCCCTGGGCCAGGCACTTGCAGACCAGGACAGTGATCCTTTTTGTTGTTAGTTTAGATTTATTTCTTTGACTTTAAGTGTCCGTATTTTGCCTATGTGTGTGCAGGTGCACCACATGTGTGCCCGGTATCAACGGGGTCAGACAAGGGAGCTCGACTGAAACAGGTGACAGATGGTGGGGAGCAGTCCCCCTGGGCTGCTGCCGTCCGCTCACATTCCCCACGTTTCCTTACCTCCTCCCCAGCCTCCTTCTCTGCTTTCATTGCCTTCCTGTGCTGATCCTGCCAGGCTTGTCAGCTGCTGCCCTCCTGTGTGTTGTTTTGTGGGGAGCCACATGTGGTGAACTTGTGGAGGTGACAGACAACTTGCAGGAGTTGCTCCATCCTGTCCTGTGGGCCCTGGGACTTGAACTCAGGCTTGTTGGCAAACACCTTTATCTGCAGAGCCATGTTGCAGGCCCTAACTGTGTATTTCCTTTGGAGGAATGTCTTCCGATTGTCCCGTCTTAGCCCCCTTCTCCCCCCCCCCCCCACCCCCCGTATGTGGGATTGCACACAGGCCGTTTAGTCTCATGGTGGTGATGTTGAATGGTGTTGTTTTGTTCTGAGACAGGGTCTCTACGTAGTCCTGACTGCTGTCCTAGAGCTCACTATGTAGACCAGGCTGGCCTCGAACTCACAGAGATTCTCCTGCCTCTGCCTCCCTAAAGGCTTGGAGTTTCCTTTCTCATTCTTCCTGGCATCCGTTGGAACACACAGAGGACGATTTTAAGTTCCGGGTTGGAGGTGAAGCTTAGCTGCTGCTGGCTTTTCAGGCACTAGGAATATGCCAGCAGCGGGAGGTACGGGCAGGAGGACCGGAAGTTTAAGGGTACAGCCAGGCAGAGTGGCGCACCCCTTCAATCCCAGCACTGGGAGGCAGAGGTAGATGGATCCCTGAGGTGGAGGCCAGCCTGATCTATAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAGACTTTGTGCCAAAAGGTAAAAGAAAGCAAAAGTTTTAAGGTCTCAAACTGAATTATTAAATTCTGAAGCTCACTGCATCTGCTTTTCTTGAGTTGGTCAAGCTTCTGCGTTAAGTCCCTGTGGTCTTAACCACTCACAGCTACTTCCCAGAGTGCTGACAGACATAGTCAGGGCTGCCAGTCAGGCAGGATCCAGCAGAGTGGCCGTGACCCAGAGTCCTGAGGTCTGGCCCAGGTCTCCGTCCTGCCATATTTTAGCTAGATGCCCTGGGACACTTCACTACCTTGAATTTTCTCTGTGGAATGTCCTGTCCCAGAGAGAAGCCTTGAGGCTGAACAGGAGGCTCAGGCTAGGGCCTCAGTGAAGGCTGCCTCTCCCCTCTTCTGGCCCTTTCTCAGGCTTAATTGCCCTTACCTGTCTCCTCCCTGGGCTCTGGTTACTTCAGCAACGGGCTCTAGTCTAGTTACCCCCACCTCCATGGAGAGAGTAGTTAGGCTCTCTTGCCTCACCCTGGGACCCAAACCCAAGAGCCCCAGGCCCGAGAGAGCACCACCCAACATCCCATGCTGGGCCTGGAGGTCGAGTCACACCGAGGTCACGGGGCTGTGCGGCACACCAGCTCCTCCCCTCCATCTCTGACTGAGGCCTGTGCTTCCTTTCGTGTACTCTCCTGCTACCCAGACCTTTACCTTCCCAGGACAGCCTGACCTCTGCTGTCCAGCTTGTCACCTGAAGCCTTGACACTCAGGAGGTGGAATTGCCCTTGCTTGGTAACACCCAGTAACGGTTACTACCATTTGCACCTGAGTCCCGAAAACCCTCTTCACAAGGTGAAGCTTTTCAGTCCCTTCTATAGAGAAGGCTTGGAGGAAGGGCTCACCCAGGTACACAGGGTTTGCCCTGGGGGCTTCAGGGAAAGTCTTGAGTCACTCAGAGCCACAGTATTTCTAGAAAATATGTTCAGGCAGCAAACACCACCAACAAAGAAAGCAAGAGGAGGCCTGGAGTGTGCTTGCCTAGTACACGGGAAGCGCCGAGTTCAGTCTTCAGCGCTGTGGAAGACCTGCCGAACACCTGTAATCCCACGATTGGGACGTGGAGGCAGGAGAATCAGGAGTTCAAGGTCATCTTTGGTGACATAGTGGGTTTGAGGACAGCCCAGGTTCTATCTCAGGGTAGCAGAAGCAAGAAAAAAATAGATGAGATCAACTTTATTATTGTTTATTATTATTATTATTATTATTATTGTATTTTATCTTTTTTTTTTTCTTCTTTTTTTTTTTGTCTTTGTTTTTCAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTAGAACTCCTTCTGTAGACCAGGCTGGCTTCAAACTCAGAGATCCTCCTGCCTCTGCCTGGGATTAAGGCCTGCACCACTTCCACCCAGCCTCTTTTCCTTTATCACACAGCAGGGTCTTGCTGTGTAGTGCTGGCTGCTTGGAACCCACCACTCACTGCATGTCCCACATTGGCCTCAAACCTGAGATTTTCCCCTAGGACTCCCAGGTTGTGTGCCACGACGCCCTTCCTGCTGAGATACTGTGCATGTGTTTCCGGCACCGAGCTGTGTGTACTCACAGCACATGTGGCCAGTGCCTCCTGCAGTGCACACGTCTAGAGTTCTTCTTTTGGACCCAGAGCTGGCTCCATTTCCTTGGGGCCCTACCTGACTGGGAAGCTTGACAGCTCTAGGTTGATGGTCATTGTTTTTGTCATAG
Seq C2 exon
CCAGAGTCACAACGAAGGGAGTTTGCTGAGAAGCTGGAGTCCCTGTTGCACCGGGCCTACCATTTGCAGGAAGAGTTCGGATCCACCCTCCCCTCTGACAACATGCTGCTGGACCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017513:ENSRNOT00000065300:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.696 A=NA C2=0.225
Domain overlap (PFAM):
C1:
PF102654=DUF2217=FE(12.4=100)
A:
NA
C2:
PF102654=DUF2217=FE(10.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]