DreINT0068526 @ danRer10
Intron Retention
Gene
ENSDARG00000061904 | fhod3b
Description
formin homology 2 domain containing 3b [Source:ZFIN;Acc:ZDB-GENE-081028-61]
Coordinates
chr16:18803339-18804409:-
Coord C1 exon
chr16:18804248-18804409
Coord A exon
chr16:18803422-18804247
Coord C2 exon
chr16:18803339-18803421
Length
826 bp
Sequences
Splice sites
5' ss Seq
CCTGTGAGT
5' ss Score
7.21
3' ss Seq
CTTATTCTATCTGTCGACAGTGA
3' ss Score
7.1
Exon sequences
Seq C1 exon
GTCATACAGCACTTTTGTCCACTGCAAATGAAGACACTTCTAATTGCACAAATGACACAGCAGATGAGATCATGGAGCGGATTGTGAAATCAGCCACTCAGGGCCCCAGTCAGAGAACACAGCCTCGTGAGAGGAGACGTTCCAGAGCAAACCGCAAATCCT
Seq A exon
GTGAGTCTCAAACACTAATTAATACACCTTGATTTAAATGCTTTTTGGTTGATTTGATTACAAATAGATGTCCATGGTTTAAACCTGTGGTCTCATTTAAAAACTTGGCTTGTCTAGAAAATAGAAATTACCTCACAAAGGTTGCAAATAAAAACAATCTTGATATGCGCACCTTCAAGTAAAGTCTGGACTAGAGTCGTTTAAAGTATCGATTTCAGTACTAAGTTTTCCAACGTAATATATTTTGATCAGGTCTTCTGCTCAAGAAGGCTTGATTTATTTGATCAAATACAGTAAAAGCAAGAAATATTGTAAAATATTATTGCAATTTATAACTGTATTCTGTTAAAATGTTATGTACTATTGTGATGGCATATCCTTTCAGTTATTCAGTCTTCAAGCGTCTTTTCAGAATTTTTTATTTTTTTTAATGACTGATACAATGTCTACTACTACTTATTCCTATTCCACTACTACAACTACTACCCCTTCAGAACAAAATTTGAACAAAAAAGTTTTACAAGACTGTAGTGATTACAATGTTACTCAAATTTATCAGGAAATAATTACAATTAAAACCTATTAAAATATCTTCAATATGTTTGTACAAATTTAAAAAACACAAACATTGATTGTTATTTAAATAGAATTTTTGTAAAATATTTAATAAATATATAATTTATTACTATAATTTGTATTAGTCTGAATAGCATTTATTACCATTTTAAAACAGCAGGTGTTTAATATTATATATGATTTTCTGATCTCCCTTAAAAAATGGCATCATTCTCCACAGTTGCCTCACACTTATTCTATCTGTCGACAG
Seq C2 exon
TGAGAAGAACACTGAAGAACGGTCTTACCCCGGAGGAGGCACAGGCTCTGGGTTTGGCCAGCGGCTCTGAGATGCAGGTGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061904:ENSDART00000131438:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCACTTTTGTCCACTGCA
R:
TCACACCTGCATCTCAGAGCC
Band lengths:
240-1066
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]