HsaINT0064183 @ hg38
Intron Retention
Gene
ENSG00000134775 | FHOD3
Description
formin homology 2 domain containing 3 [Source:HGNC Symbol;Acc:HGNC:26178]
Coordinates
chr18:36769265-36779779:+
Coord C1 exon
chr18:36769265-36769426
Coord A exon
chr18:36769427-36779447
Coord C2 exon
chr18:36779448-36779779
Length
10021 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
GACCTGCACCACCACTGCAGTGC
3' ss Score
3.97
Exon sequences
Seq C1 exon
GATCCACTAGTTCCTGGACTATGGGAACTGATGACTCGCCCAATGTCACAGATGATGCAGCTGATGAGATCATGGACCGCATCGTCAAGTCAGCCACCCAAGTGCCCAGTCAGCGAGTGGTGCCGAGGGAGAGGAAACGATCCCGGGCCAACCGGAAATCTT
Seq A exon
GTGAGTGCATTAAAGGAGGGGCGAGCCTTCACCCCTACAGGGATCTGCCCTCCCATTCTACGTGAACTGGGAAAGGTGGAGACACAGCTCCAGTGAATTGTCAGTGGCTCCCAGAGTGCCTACTTGCACTCATCCACAGAAAGTTTCAGGGTTGGCTGTTGACGTTGGCCATTGTGGAGGAGGGGAGCTGCAGCCACACCTGTTCAGTGTATCTGCCATTGGTGGCTAGGCCTCTCTCAATTCATACTTTCTTCCCAGGAAGGTATGAAAAGTCCTTAAGTGTCTGTGGTGTACCAGGGGTGAGCACGATGGGCTAGTGGAGCCCATCGTCAAGTCCAGCCTAAGATGCTCTGCTGGAGGCTGTGTTTCTGCCCTGCACCCAGCACCAGGGGGCGCTTGTGGGGCTGGAGACTGGCCTCTCCTGGGTTCATCGCTGCCCACAAGCATGTTGAAGGCAAAAACTAGGGTAGCAAGGGATTTGATGGTCATTGGGATGCTTGAAATATTTAACGTGGCCTAGGTTGACCATTTTTTCCTTTTCCCACCAAATAGAGGATTCAACTAAATCAAAGTGACTGATTTTCCTTTTTGGTCTGAACCTACTGCCTGCTCCTGCCCACCCAACTCATGGGTGTGGGGTTGCCTCTGTCTGCCCCTCTCAGGGACAGTGCTCCATAGGGAAACAGGTTCCTGTAGATCCTTTGACATCTCCCTGCATGAGCTGTGGCCTTGAGTGTTTCAGAAGAGCACTCAGCCAGCCGCTGGGTCACTCTAGAGGCTGCTTTAGTCTCCACTGGCTTTGCCTCTGAGAATAAGGGTTAGTGACAAGGAAAGAAGCCAGTGGCTTCCTCCTGTTTTCTCCCAAAAGTGAAAGGAGCATGAGTCCAGCTAGGCAGGGAGTTGAGTAAGTACTCAAATTCAGAGAGCCCCAAACTTGTTCCACCCTTGAGATTCACACAGGAGGTGACCAGGGTGTGGCCTGTGTATGTTGGACCCAGTGGTTCTGCTTGACCCATTTACACACGTTTCCAGGATACAGAACACTAACCCACATTCCTGTGGTCCCCTGCTCCTTTCCTATGATCTGCTTTCGTTTCTGATGAGAATTTTTCCCCAGAAAGGAAAATAACACTTGAGGTTGGGGTGGGGGTGCAGATAGGGATGGGATGAGGAGCAGGGAATGGGATTCTCATTCAGTAAGATGGGTGGACTGAGAATCTGTTTCTGACAAGCTCCTAGATGAGGTTAATGCTTCTGGCCCTTGGTACACACTGTGAGTAACAAGGCTCTTGAGCTGTGGTTCTCAACCCTGGATACACATTAGAATGTTCTGCAGAGATGTTTAAATTCCTGATATCTGGGCTGCACCCACACACACTACTTCAGAACCTCAGGGGTGAGGCCTTGAGGTGTGGGTCCCTGCCCCTTGGATTAGTGGCATTAGGTGTGGGCTCTCTCTTTATTGTATGCCTTCCTCTGCTCTCCACTACGTTTATTTCATTTTTTAAATGGAAAACTATCGTTCAGGGAGACTGGCTTGTACATCTTCAAGAATATGTTTGTAGATTCCAACATCAATATCTAAGGCCTTTACATTTCTTTCTTCTGATATTTTCCTATATTCTCACTGCTACTATGAATTCTTTGCTGTCTCCTGGTGCACTTGTGAAAGAACTTGGCTAGGGGCTCGCAACTCAAAGTTGAACCTCAGACAATACGTGTGTCTCCTGGAGGCTTGTTGGAATTGCAGATTTATGGGCCCCCTTTCTAGGGCAACTGATTCAAATCTGCATTTAATGAGATCCCCAGGTGATTCATGTTCATAATAAGATGGACAGCACCGGGGCATGAGACCAGGAGTGGAAACTCTTCTCCGAAGGGGCGAGGCTAATCCACACTCACACTCCAGGCTGCATCTCAGTTGCTCTAGGCCAAGGCAACGCTTCCATTTTTGCCTATCTGCAGGCTGTGAAATAACATTTCCTGTGGTTTTAATTTGCATTTCCCTTCACTCTGAGGAGGCTGAGCCTATTGCCATTTGCATCTCTCCTTTTGTGTATGGTTTGTCTATATCATTGGCTCATTTTTTTGTGATAGGAAATCTGCTTAAATAGCTTTTGAAATGAAACTTCCAAAAGATTTTTTGAGGTCTTAAGTAGTTTATCTTCAGTAGTTGCCCTTTATTGGCTTCCTGTTAGTTCATTCAAGGAGGCCAATAGCTACTTCAAGGTCACCACATGGCAGGAACCTGCGCACCAGTTAACTCCTGGTCTTTCTGGTGTGGGCAACCTCATCGCAGGGCTCACCATGGGGAGGAGCTGGGAAGAGCCATGGAGAGGTGGGCCAAGGGAGAAGGTTGGACCAAGGCTGTGAAGACAGAGACGTCCCATTTGTCAGGTGCATGGCACCCTGACAGAGGGTTGGAAGGTTTGGGTCAGGGACCTCAGACAGGAGACAGCATGGGACATTGGACTGGCTGGTCCTTGGAGGCCCAGAGCATGTTCTTCTCCTCCAAGTCTTCATGGCCCCATCCTCTGGTCTACAGAGATCCAAATTCTTAGACTCATAATGTCACTGGGCACAATAACGCGGTCATAATTAATTTTCCTCTTCAATCTGGCCAGAGAGATGTTTTGCCTGTTTTTGTTGTTGACATAAAATAATTTCCTATGGTATCGTTTTCATTTCAATTTTATGCAAAACAGTCATATATTCTTTTTATTTAGCCAAACACATTTTTCCTGTGACACAGTTACTATAACAAGTACAGCACAGCATGTATGTGTTTATCTGTAATGGGCTTAATTTATTAGTAATGGCACTATCAACAGAAATTTAAGAAGGGAGAAGTTAGACTTTGATTTCTGTTATAAAGGGATGATAAACTCCAGCTTTTCACAGAGGTTAAAGGAACAACAAAAAGCAATTTGCAAAATCAATGTGAAGTTTAGTGGTTTGGGCCTCATGCTGAAACAGTGCTGTATTTGATTTGTTTAATGATGGCAATGAGGCAAGTGGATAATGAATAACCAACATATTTGGGCCATAACTCATTTGGCTAAAGACAATAATAGTTCTGCTCTTGCAGGAAACAAAACAGAATCCATCCCATAACCTTGAAATTTATGGCCTGCAAGGCAAGCCACTCGAGGATCAGAGATAATTAAATGTCTGCTTTCATGTTTGATGCTGGTGACTGAGCCCACACATGCCGAACGTCCCACTGAAGCCTGAACTTTGCAGTCAGCTGGGATAGCCAAGGGCCTCGTAATAGATTCACAGGTTCCCATGGCTCAGGTCGGCTGCTCTCCCAGCTGGTGCCAATCAGGGGCACATTGAGTAAAATGTCTCAAATCGTCCAGGTGATCTCTAGCCTGTGAAATGGCTGATCCAGCTTACTTCGGGTGCCCACCCTGCCCCAGATTCTATCCAAGGATCTCCAGTAGCACCTACTAATTTCTAGAGCTGATTAAAGATGGACTGGCCCCTCCTGTAAAGACAGCGGAGGGTACCTATGCATGAGCACAAGACACAGGACAAGAGGATAAACAGAACAAGTCCAAGAGAGAACTGAGGTCTCTTCCCTAAACCCAGGTGGACAGTCACTGCCTTTTAGAGGGCATCCCTCTCTCCAGAGCAGGGCCAGGCTGGAGGCCAGGACACTGATATGCTAAGTCAGAAAGTCGGGACTCAGGTGGAAGCCTCGGGGTTAGAGAGGCAGATGCAAGAAGCAAGATGCATTACATGGCTCTCTGGTGGTTTCACTTTTAGACAAATCACCCTCCCAAACAGGGGGAACTGACACATTAAAGAGGAGGCTTGTCTGTAAGTCCCCCCCACAGTGTCCGCCTGAGTGCCAGGTTCAAAAGGATGAAGGAGCAGTAAAAAGACGAATCCAAGAACCTGTCTTTCCTACCTCTGAGAGCCTTTTTGAGGGGAGGCATAGGGTTCCCATGGTGGTACTCAGGGAGGTGCCATGCACCTGACCGAAGGATGTTTCCGTCTTTCATCATTTTTGCTGCCAAGTTCAAATGGAATCCATTTCCATGCTCAGGAATGCACACATGCCCACAGCAGGGATGGGGCCTGGGTCTCACGAGTGACTTGGCCCTTACCGTGTATCAGTTATCTTTTGTACGATGAAGGCAGTAGTGCCAGCTTCCTGGGACGGTTGTGGGGTTAAGCGAGGCATCTATGACAGGTTCCCGCCACCTTTCTTCCCTTCCAGGCTGTGTCTCACTGCTGCCCAAGGGACAAGTTGCTGATGGGAATTCGTTGCTGCCTGAAGGTGCTTAGGGTCTGCTGTGCACATCCCGACCCAACTGTCTGCTCTTTTCACCCACCTCACTCCCCACCACACTGTCCACTTCACTCTGGCCTGCTACAATTAGTAGCCCAGACAGATCTTCACCACTCTTTTTTACCCCCAGAATGCTTGCAACTGGCACATAAAGGCTGCATTGTCAGCATAGCACTTGGCTAGCATTGTTGAGATAACCTAGGCAGAGGGCTGACACTCTCGACTTAATCTGGGAAGGGGAAAGGCAGTTTTGTCCTGCCCAGAACTTAAAATATTGTGGAAAACTCAAGTCTGTAGATTCCTGAGCTGCCTTTCCTTTCTATCCTTAGTTTAGGTAGATTGTCCCAGAAAACAATTGGCAGAACTTATTTTTCCTTTCGGGCCAAACTCTCCCTTTGCCCACCTCCAACATGACTCATAGGAGGAGGCAGTTGGTGTTCGCATTTTAACTGACTGCCTTCTGTTCCTTTCCTACCTAGGAACCAAAAAGAGTCTTCAGGAGTACTGGATGCTAATGTAGCCACAGGTATAGTAGGAGGGCATGGGCTGGGCTCTGCAAGGCCAAGGAAGCCACAGCCAGACCAGTGATGGCAGAAAGCGCCTAATGCCATGAGTATTTCTGAGTGCTGTCTCAGCCTCAGTGAACTTCATCTTGGGTTAGATGGAACTAGGAGACTTCAACCTTGTCACCACAGACTGTCACTGTCCTGAAAACCCCGCCTTTTCCTGCATCTCAGATGACAGTGATTTAAGTGAGGGGCCCCAAACCTGGACATCTGATTACCCAGGGAAGGTTCAAATGCAGTGCCTGAGCCTCTCCCCAAGACTCTTGCTCAGTGTGTCTGGGGTGAGTCCAAGAAATTGAATTTCAGTCAACTAGATTTGGGAATGTCTGCTTTTTGTTGTTGTTCTGGGTTTTATCGCTTCAACGTTTTATTCTGAAAAAATATAAGACTTACAGAAAAGTTGCAAAAATAGTAGGACAATTTAGCAAAACCAGGAAATTCAAACTGGTACAGTACTATTAACCGAACTGTAGGCTTTATTCAGATTTCACCAGTTTTGCCACGAAGGTCCTATTTTTGCTCTACGATCCTACCCAGGATTCCAGATTGCATTTAGCCCTCATGTCTGCTTAGTCTCCTCTAATCTGTGAGGACACTTTGTGACCTTGGTATTTTTGAAAATTACCGGCCAGTTATTTTGTAGAACATCCTTCCATTTGGGAAGGCTGTGCATATAATGGACAGGATTTTATGTGGAAAAAAAGGAAGTCCTAGGGAGCACATCTGGCCCTGCCGTTTTACGTCCACTCAGAACAAGGAGGGCGTGAATGGACGGTGTTGAACAGTGGCCAAGCCCGGGACCTCCCAGCCACAAGACATGGACATTTAAGGCATCTTGAAGTTCTGATGTTAGTCAACTAGACTCCTAGACACATTGCTCCCAGTACACCTGGTAGAAAATCTTTGGGATCTTTGGGATTAAAAAACCAAAAAACGATTTTCAAATTACACTTGATAATTATGTGCAAAAAAACCCCGAAATAACATCTCTCAGTGCTGCAAAGGTGAAAGCGCACAGATGGATTTCTGTCACCTGAAAGTAAAGTTGGGTCGATTTCCTGTTGATGTGAAAGATGGTCAGGAACTGTCCTGCCAAGCATCGGCAGGGCACAGCTGTTTCCAGTGTGGACTGTGATCCAAAGTCGGCTCAAACCCTTCTCTACCACTAAGTGTGAGCCCTGGGCCAGTGACCAGGTTCTCTGGTCCGGGTTTGCTCACTTATTGAAGATATAACAAGAGTTCCCATCTCACAGTGTTTCCATAAAGATTAAGTGAAACAACCCATGTAAACACTCAGTAAATGGTGGCTGCCATTGCCATTGTTCTCGGATGCGACTCATCTTAGTAGAGTCACCTGTGAGCCCTTTGTGGGAATTTTTAATGTTTTCATTTCTAGGGAGGAAGAAAAAGAACTTGGGTGTTTTTCCTGAGTCCCCAGACAGTCCTGTGCTGCATGCTGGCAGCAGAGGCACCCCACATCAGATTCTTCCACCATCACTTTGACACCGTGAGAACTGTCACCAGGGCCTGGGGTGCAGTGTGGCTGCTGGTGCCTTCAGAGTGACCCATGCCATCTATGGCAGAGTTGCAAGGCAGACAGGGATAAACATTTCCAGTCTGTTCTCTGTTATGAGCTTTGAGGGGAGGCCGTCCCGTGGGAAAGGCTGGAGAGCAGCTTTGATTCAGCTGGAGCATTTGAGTGGGAAGTGGAAATGAGGAGTCGGGAGAGGCCCAGGTGTCATCCGCAGCCAGCCGACCTTGCCACAGTGCTGGAGAAGCCTCTCTACTGGGTGGCAGAGTTGTTTCTGCTGTGGAAGTTTGCTGTGTACCATTTCATACCCTGCCAGCACCTGTTTGCTGGCCCCCTTGTTTTGTTCTCTTATGTCCCCAGCCTTTTTTTTTTTTTTGCTTTCTGGAAACTTTCTGAGAGCCAGCTCCCTGGCTGGACCCCATCTGCTGCCCTGAGTGTTTCTCCCCACACTGTGTCCCCATCAGGCCCCTGCCTTTCTCCCCAGAGGCTCCCATCGCAGAGGCTCAGGGTGTACATGTACATGATGTTTGATGAATGGCAAAGAAACTGACCAGCAGACAGATGGTTGACCAAACACCCAAAGGGGCTCTTGTCGCGTGTGACTTGAATTGGGTGTAAGACTGATTTTAGCTGATTACTTTCATTTCACGTGGTCTTTCAAGTGGTGAGGTGAATTAACTTTGGCTAACAAAGGGAAGGTTTCAGATTCTCAGGTATTTTTCATTACACCAAGGGGATAACATATATCTAAGAGAATTTTTTTCAAATTGCCATGGAGGTCCACAGAAAGTAGAATTTCATAAATGGGGAAGACTTTTCCATGAATACTCGCTTTTCAGGGATACATCTGGCAAGCTAAGGGAATGAAGCCTATGTTGGCTTTTCCCTCACAGCAGAGGACACATGAGCCCAGACCAGAGGGTGAAGCAGCATCCCAAGGGGTCTGGAATATCCAAACCATGAGTAGACCCACGAGGGAGAGGGCACAGGCTCTGTGCTGTCAGGTAGCAAGACCCATAAAGGTACCTTTAGTTCTGTTCTCTGAGCCTGTCCCAGATAGGCTGGCTCAATGTCCGAAGCTATTAAAAGATTGTTACATGAGCTGTAAGGTGACCGGGCCCTTATTCGAGTATTAATATTTATATCAACTGAACTGAGCAGTTACAGGACTAAAGCAAATGTGCAAACAGAATTGTTAAGCATCTTTAAATACCTTCATGGGTAAAATATCTGTGGGGTCTTCTGTAGTCATTCAGCCACAATATATACCTAAATGGACAAAGATTCATAGACTGATGTCCACACCACCTTCTGTGGCTGGTGAAATTTTAAGATGCCCAGCTAGTGCAGCATGAACTACTTCTTCTTCTTTTTCTTTTTTTTTTTTTTTTTTTTTTGAGATGGGGCCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGCACCATCTCGGCTCACCGCAACCTCCGCCTCCCAGGTTCAAGCAATTCTCTGCATCAGCTTCCCGAGTAGCTGGGACTACAGATGTGTGCCACCATGTCTGGCTAATTTTTGTATTTTTAGTAGAGATGGAGTTTCACCATGTTGGTCTCAAGCTGCTGACCTCAAGTGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGTGCCCGGCCAGCATGGACTTTTTAAGGAAGTATTTTGTATCTTGGTTAAGAAGTTGCAGCAAGAGGTCTTTCTTGTCAAGAGAGATATTTTATCTTATTTACTGTTGTTAAAATTATCTTTCTTTAACAAACACTCTAAGGAGTCTTTAAAGAACATAAAAGGTTATTACAAACTAGTATTTTTATTGCTGCCCCATAGAACAAATTCTGTTGCTCAGTTGAATGTAATCTGTCTCCAGCTGAGACTTAGGAGCCAAACATTTTGTCTTGTTGAGCCAAACATTCAGTCTGGAGGCCAAGGGATCAGGGGTGGGGGAAAGAGGAGCTAGTGCAAGAACAGCTACAGATAGATTGCTTCAGGGCCCAAAGGTAGGCTTGGAAATACAGTAGTTGCAGTAACACGATTTGAGAGAACCCCTCACCACATATCCCATGTCTCTCTAAAAACCCATACTTGATGTCTGTGTTTTGATTCTTTGAGTTAAATGCTGAGCACACAATGGGTTCTCAATAAATCATTTGTTGGTTGACCAATTGATGGATATTATGTTGACCCCTGTTCCAAGTGCTGATTCCTGGAAGAGAAGGAGCCCTTTATTTTCATAATAGGTATTAGTCCCCATTGATTCTGCCATGGACATAGGTCTTTCAGATCTTTTGTCCACAGGCTGAGTGAGCTTATATTTAGGGGATGATGGGAAGGCATAGACCATGGGGTGTGGCCTGCAGATGCATGAGGTGGGCCCTGGCCTCTGGGGAGTAGATGAGGGGAGTTGGCAAAGGAACTGGGGAGACATTAAGGTGAGCTTACTTTCTCTGAACTTTGATCAACAGCCTGCCCTGGTCATCTCAGGAACTCTGGCTGATTTAGGGATTTAGGGTGAAGGCAGATCCATAACGTTTCTCTTCTGAAAATGAATACCCCAAACTCTGTGCGAACTTTAAAGAAATACACAGTGGGTCAAATACAATTTGTAAATTAAGGAAAATGTAATTAGCCACCCTTTCAAATGAAGACTTGTCTTGGGTGAGGCAGCTACCTCCTCATTCACCCTTATCCAGCCTTTATTTTGATGTTGAAATTGAAATACTAAACAATGGGAATACCATCATGCCAAGCTAAACACAAGCCAATTCTAAGTCAGTTAAATATGAGCATCCCTCCAGTTGCCAACTGCAACCCCCCAGTGAGAGTGGTCATTGGCCATTCTTGAGTCTTGTGTGTTCCATAGAAAACAGCCACCAATTCCAGCCAGAATAAGTTTGGCAGTTTGCTCCTTAGCCTCCATTCCTCGAGGAGCCACTGGTTATTTTAATTATTGTCTCTAGAGGCCTTTTAGTGAGTTGAGGCTAAGACCCACAGTACTCATGGAGAGATTTGTCCTCACTGCTGCCCCTTGCCCTGGCTTCATGCACTTGCTCTGTGGGTCTTGAGCATGTCCCCAGCTATTGTTGGTCGTCTGTTGGATTTGTGAGGTTGTTGGGTCTTGTGGAACCCCTCGCTGTGCACTGGTTGCCTCACCTCATTTGTATTAGTGGAGCTTGCATTTTCCCCTGCTCTGGAATCACCTTCCCAGCTCTGATACACTCCTCATACTGGGTAGATGCTGAGGTCTCTCCTGCCCTCTGCACTTCTGCAGTTCACCCCCTTCTCAGAAGCCTCGTGAGGGTGAGCCTCTCCTCCTTTCTCTCCTCTTTATAAGTGCCCGCATCACTCCTCTCGGCCCTCCAAATCAGCACCTGTGGCATTGTTAGGCCAGCCTGTGTAGCCCCAAACTTTTGTCCTGGCAGACAGACTGCAGGGCACTTCAGCAAGAGCAGGAAGGTACAGAGTGTGAACCCTCTGGCTTCTCTGGAAGTCCCTGGGGAGAAGGGGGGACTGGAGTCTTGACTGCCCTGTGCCTTGCTGCTCATACTTCCTTTTCTTCTCATCCCTTTGGGTGTGACCTGCACCACCACTGCAG
Seq C2 exon
TGCGAAGAACCCTGAAGAGCGGCCTGACCCCAGAAGAAGCCAGAGCCCTGGGCTTGGTTGGCACCTCGGAGTTGCAGCTGTGACACTCATAGGTTACTCCCAGGAGTGTGCTGAGCAGAAGGCAAGCTCTTGCTGGATGAAACCCCTCCAGGTGGGGTTGGGGAGACTTGATATTCACATCCAACAGTTTGAAAAGGGAGAGCTCAATTCCCAGCGTCACCCCATGGCTTGTGTTGCCTGCTACGCATTGACTTGGATCTCCAGGAGTCCCCTGCACATACCTTCTCCATCGTGTCAGCTGTGTTTCTCTTGATTCCGTGACACCCGGTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134775:ENST00000359247:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=NA C2=0.812
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development