MmuINT0064502 @ mm9
Intron Retention
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:25289034-25292002:+
Coord C1 exon
chr18:25289034-25289195
Coord A exon
chr18:25289196-25291411
Coord C2 exon
chr18:25291412-25292002
Length
2216 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
ACCTGTGGGGACGCCTGCAGTGC
3' ss Score
2.41
Exon sequences
Seq C1 exon
GATCCACTAGTTCATGGACTATGGGAACTGAGGAGTCACCTAGTGTCACTGATGATGCGGCTGATGAGATCATGGACCGCATTGTCAAATCAGCCACCCAAGTGCCCAGTCAGAGAGTGGTGCCACGGGAGAGAAAGCGTTCCAGGGCCAACCGCAAATCTT
Seq A exon
GTGAGTACATTTTGGGAGGGTAGGGCCGTGTCCTTGCTTTTCAATATTACCTGGAAGGTCAGAGACTCAGAAGGAAGCTCCCATCACTGGTCTGTGGCTCCTTAAGAGTACTCACCTGCCTCCTTAGCAAGAAGGCCCTATCAGTATCTGCCATTAAGGAGGGAGGGGTGGCAGCCATACTTGTCAAATGTCCTTTCTGTGTGTGCCCTATCCTCTGTAAGTTAATACTCTAGTGAGGTGTCAGAGGCCATTGAAAGCCTCTAGTAGATGGCGGTAGGGCTTATTACCATACTAGAGGCTGTGTTTACTTGCTGAGGTAAAGGCTGGCTCCTCCCAGAGCTTACCATAGACTTTGGTAGGTTAATACCAATAAAAAGCAGGGTATCGAGAGGTCAAGCTTACCATTTAATGTTTTAGCTTCATCAGGGTTTCCTTTTTCCTTCCAAACAGTATTCGACTAAATCAAAGTAACTCGTTAGTCTTTTGAGTCTGAACTTGCTGCCCGAACTTGCCCCTCTATCTGTACTGATCTTGGCATCTGCCAATATTAGCTGAGATCCAGGGTGTTCTAGGCTCATTTTCCTGGCTTCAACCTGCTTCTGGGTCATTCATGGGGCAGCTTGAATGTCCACTGGCTTTGGCTCTGACGCTAAGGGATGTTGAAGAGGGAAAGGAATCCCCAGGTAAAAGCAGAGCAATGCCAGGCTGGCAGAGAACTTAGTAAGGATGCAGATACAGGACACTCCCAGTTATCCTGCCCATGAGGTTCACACAGGGGTGACTGGGGTATGGCAAGAAATGTTAGCCTTGTGGTTCTGCTTGTCTCAATACTGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTTTTTTTATTTTAAGAGCAAAGAATGCCAAACCAAATCCATCATAGCTTGCTTTTTGCATATGATCTTCTTTAGTATCTGATGGGAATCCTTTCCCATAAGGGAAAATAACACTGGGGTCAGGGTGAATGATATAATTCTGCTGAAGATGGATGGGCTAAGATGAGTTGGCTTCTGGGGAGCATCCAGGAAGATGCTGCTGCTGCCCTTGGTACTCACATTGAGGATCAAGGTTCTGGAGGCATGGTTCTCAACCTTAAATATACATTAGAGTGTTCTGCCAAGATTTAAAATTCTAGGTATCTTTGCTCAAGCGATGATCCAAATCAACCAGTGAGTTCAGAACTGTAGGGCCTCTTAGTCACTGCCCCTTAGAGAATTAGTTAGTACTGGCTGGCCTAGAAATCACTAAGTAGAAAAAGCTATCTTTGAATTCACAGCTATCCTCTGGCCTCTGCTTCCTGAGTGCTGAGTTAAATGCATGTACCATCACTCCTGGCTTCCCTCCAGGTTCTAATGAAAGACTATCATCGTGTGTCCTGCTATTGTTACATCTTCAAGAATTCACTTGGTTTATGGTTTTCCGCCCATAGGAGGGCCTTTACATTTAGTTTTGTTGATGGTTTGCTTTTTCCCCGGTGGGGCTGTGATTTTTGCACCTGTCTAACAGAGAACCTGGCCAGAGACTTGTTCCTCAAAATTGCCTCAGATTTAGGGGAGTTTGCTGATTATCCCAAACACTGTTCCTGAAGGTCCTTAGTCAAGTTGATACTTGAGATCCACATTACTCCGAGACAACTCCTGACCATTGGCCCTTGCCATGGGCTCTGCCTACCACTGGGCTGCACAGGGCCCGGGTTCTTAGGTCTGTTCCTATCTCTGTATTCCCTCCCATAACTTTGCAGTTGGCACTTGCTGACCCCTCCTGCTTATTTTCCCTTCTTGTATTTTCAGAGCCAAGTTTTCCATTTTGACTCTTTCTTCTCTGTTACATTCCACCCTAGGAAGATGAGCTTTCCACATAGCACCTACACTCTCTGCAGCGTGCACCCATATTTTCAGAAACCCAGTGAGAACATTTCTCCTCTTGCAATCTCGAGGTCTCTCCCTGGGTACTTTATTCAGCAGAAGCAGACTAACCCTGGGCTACCTTGGGTTCTTAGGAAGTACTGGTTCAACTGAGTGCCATATACCTTCTTGCTAACACCTCCTTTCTCTTCTTGTCTTTTTGCTTGTGACCTGTGGGGACGCCTGCAG
Seq C2 exon
TGCGAAGGACCTTGAAGAGTGGCCTGACTCCAGAAGAAGCCAGAGCCCTGGGCCTGGTTGGCACATCTGAACTGCAACTGTGACTTTTGTAGGTTCTCAGAAGTGTGCTGAGCAGAGGACCAGATCTGGCTAGACCTGCCCCTTTCAGTAGAGGCAGGGAGACTTGACCTGAACATCTGATGGTTAGAACTGAGTCCTCATTTCTGAGTAACACACTGCTTGTCACCGTTGCGCATTGACATGGATCTCCAGAAATCTCCTGCATGTACTTTATCAAGTCAGCTGTGTTTCTCTTGTTTCCTTGATACCTGGTTTATTAGCTCCAAGTGTGACACCTTTTCTAGGAAGCAACAGTCCTTGTAAGGAACAAATCACTTCTGTCACAGTTGTTAAGATAACATGGGGCAATGTGATTAGACTCAGAGACTGGGTCTCTACAACAACCAAATGTCCAGATATAAATGCCAATGCTGTACACACATACAAGCACAGCTTGTTTACCAGTTGTGGATTTTAGATGTACTAAATGTTTATACAAACTCATAAATGTACACTGTGTTTCAATGACTAAATAAATAGAGGTTAATGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295-Fhod3:NM_175276:26
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: