RnoINT0061072 @ rn6
Intron Retention
Gene
ENSRNOG00000027230 | Fhod3
Description
formin homology 2 domain containing 3 [Source:RGD Symbol;Acc:2322319]
Coordinates
chr18:17329267-17332205:+
Coord C1 exon
chr18:17329267-17329428
Coord A exon
chr18:17329429-17331604
Coord C2 exon
chr18:17331605-17332205
Length
2176 bp
Sequences
Splice sites
5' ss Seq
CTCGTGAGT
5' ss Score
8.41
3' ss Seq
ACCCGTGGGGACTACTGCAGTGC
3' ss Score
1.5
Exon sequences
Seq C1 exon
GATCCACTAGTTCATGGACTATGGGAACTGAGGAGTCACCTAGTGTCCCTGATGATGCAGCTGATGAGATCATGGACCGCATCGTCAAATCAGCCACCCAAGTGCCCAGCCAGCGAGTGGTGCCACGGGAGAGAAAGCGTTCCAGAGCCAACCGCAAATCTC
Seq A exon
GTGAGTACATTTCAGGAGGGTGGGGCTGTTTTGTTTTCTTTCAATTTGACCTGGAAGGCCAGAAACTCAGAAGGAAGCTCCCATCACTGCCCCGTGGCTCCTTAAGAGTACCACCTGCCTTCTTAGCAAGAAGAAGGTCCTATTAGTATCTACCATTAAGGAGGGAAGGGTGGCAGCCATACTTGTCAAATGTTCTTTCTGTGTGTGCCCTATCCTCTATAAGTAATACTCTAGTGAGGTCTCAAAGGCCATTGAAAGCCTCTAGTACGTGGAGGTAAGACTTACTACCAAGTACTGCGCCAGATGGTTTGCTAGAGGCTGTATTTTTGCTTTTCACCCAGCACCAGAGGCTACTTGCTGGGGTAAAGGCTGGCTTCTCCCAGGGGTTACCATAGTCTCTGGAAGGTTAATGATTAAAAAAAAAAAAAAACCTAGGGCTAGCAAGAGGTCAAGCCAAAGGCTGACCATTTAACATTCTAGGCTTATCAGGATTTCCCTTTTCCTTCCAAACAGCATTTGACGACATCCAAGTAACTGGTTAGTCCTTTGAGTCTGAACCTGCTGCCCATTCTTGCCCATCTATCTGTACTGCCCTTAGCATCTGTCATTATTAGCTGTGGCCCAAGGGGGGGGGTTTAGGCTCTTTTTCCAGCTTGGCCTGCTGCTGGGTCATTTATGGGGCAACTTGAGTATCCACTGGCTTTGGCTCTGAGAATAAGGGATGTCAAAGAGGAAAAGGGATCCCCAGATAAAAGCAGGCTGGCAGAGAACTTAGTGGGAATGCAAATACAGGATACTCCCAGTTTATCTTGCTCATGAGATTCACACAGGGGTGACTAGGGTATGGCACGAAAGGGTTAGCCTTATGTTTCTGCTTATTTCAATACTGTGCCTTTTTTTTTTAAGGACAAAGAAAGCCAAACCAAATTCCTTCAGTCAATCAGACCTTGCTTTTTTTTTTTTTTTTAATGTGATCTACTTTAACATCTGATGGGAATTCTTTCCCAGAAAGGAAAATAACACTGGGGGCAGGGTGAATGATATAATTCTGCTGAAGATGAACGGGCTAAGAGTTAGCTTCTGGGGAGCACCTAGGTGAAGATGTTGCTGCTGTCCTTGGCGCTCATGTTGGGTATCAAGGCTCTGGAGTTGGGGATCTCAGCTTTGGGTATACATTAGCATGTTCTGCCAAGATTTAAAATTGTAGATGTCTTTGTTCAAGCAAGAATCTAAATCAACCAGTGAGTTCAGAACCTCAGGGCCTCTCAGTTACTGTCTCTTAGAGAATTAGCTAGTGCTGGCTGGCCTAACAGTCACTAAGTAGATAAAGCTATCTTTGAATTCATAGCTATCCTCCAGTCTCTGCTTCCTGAGTGCTGGGTTAAGTGCATGCGTCATCGATCCTGGCTTCTCTAGGTTCTAAAGAAAGACTATCATCGTGTGTCCCGCCATTTTTACATCTTCAAGGATTCACTTGGTTTATGGTTTCCCACCCCATAGGAAGGCGTTTACATTTAGTTTTGTTGATAGTTTGCTCTTTCCCCAGTGAGGCTGTGACTTCTGCTCCTGTCGAGACCCCGGACAGAGACTAGTTCCTCAAAATTGCCCTAGTTTGCTCTTTGGCATATATTCGGGAAGTTGCTGATTATCCCAAACACTGTCCTAAAGGTCCTTAGTCAAGTTGAGGCTGACACCCACATTACTCATACTCTTCCTGGCCACCAACCCTTGCCATGGGCTCTGCCAACCACTTGACCTCAGAGGGCCCCAGGTCCTTAGGTCCGTTCGTACCTTTGTTTTCCCTCCCATAGCCTTGCAGTTGGAGCTTGCTGACCCCCTCTCCTGCTTATCTTCCTTCCTTGTTCCCTCAGAGCCAGGCTTCCCATTTTGTCTCCTCTCTGTTACATTCCACTCCAGGAAGATGAGTGTTCCACATACCACCCACAGTCTCTGCAGTCTGCACCCATTTCTCAGAAACCCTGTGAGGACATCCCTCTTCTGCTTGCGATCTCAAGTTCTCTCCCAGGGTACATCATTCAATGAGAGCAGAGTATCCCTGGGCTCCCCTGGGTTCTTGGGAAGAAGGGTACTGATAACACTGAGACCATGTGTCTTCTTGCTAACACTTCCCGTCTTTTCTTGTCTCTCTGGCTACGACCCGTGGGGACTACTGCAG
Seq C2 exon
TGCGAAGGACCTTGAAGAGTGGCCTGACTCCAGAAGAAGCAAGAGCCTTGGGCCTGGTTGGCACATCTGAACTGCAACTGTGACTTTTGTAGGCCCTCAGAAGTGTGCAGAGCAGAGGACCAGCTCTGGCTAGCACCACCCCTTTCAGAAGGGGCAGGGAGACTTGACCCGAGTATCTGATGGTTAGAACTGAGTGTTCATTCTGGGTACCACACTGCTTGTGCCACTGCTGCGCATTGACATGGATCTCCAGAAATCTCCTGCATGTATTTTATCTAAAGTCAACTGTGTTTCTCTTGTTTCCTTGATACCCGGTTTATTAGCCCCATGTGTGACACCTTTTCTAGGAAGCAACGATCCTTGTAAGGAACACATCACTTCTGTCACAGTTGTTAAGGTAACACGGAGCAATGTGATTAGACTCAGAGACTGGGTCTCCACAACAACAAAACGTCCAGATATAAATGCCAATGTTGTACACAAATGCAAGCACAGATTGTTTACCAATTGTGGATTTTAGATGTACTAAATGTTTATATAAAACTCATCAATGTACACCATGTTTCAATGACTAAATAAATAGAGATTAATGTCATCATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000027230:ENSRNOT00000041961:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.815
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]