MmuINT0064502 @ mm10
Intron Retention
Gene
ENSMUSG00000034295 | Fhod3
Description
formin homology 2 domain containing 3 [Source:MGI Symbol;Acc:MGI:1925847]
Coordinates
chr18:25130533-25133500:+
Coord C1 exon
chr18:25130533-25130694
Coord A exon
chr18:25130695-25132910
Coord C2 exon
chr18:25132911-25133500
Length
2216 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
ACCTGTGGGGACGCCTGCAGTGC
3' ss Score
2.41
Exon sequences
Seq C1 exon
GATCCACTAGTTCATGGACTATGGGAACTGAGGAGTCACCTAGTGTCACTGATGATGCGGCTGATGAGATCATGGACCGCATTGTCAAATCAGCCACCCAAGTGCCCAGTCAGAGAGTGGTGCCACGGGAGAGAAAGCGTTCCAGGGCCAACCGCAAATCTT
Seq A exon
GTGAGTACATTTTGGGAGGGTAGGGCCGTGTCCTTGCTTTTCAATATTACCTGGAAGGTCAGAGACTCAGAAGGAAGCTCCCATCACTGGTCTGTGGCTCCTTAAGAGTACTCACCTGCCTCCTTAGCAAGAAGGCCCTATCAGTATCTGCCATTAAGGAGGGAGGGGTGGCAGCCATACTTGTCAAATGTCCTTTCTGTGTGTGCCCTATCCTCTGTAAGTTAATACTCTAGTGAGGTGTCAGAGGCCATTGAAAGCCTCTAGTAGATGGCGGTAGGGCTTATTACCATACTAGAGGCTGTGTTTACTTGCTGAGGTAAAGGCTGGCTCCTCCCAGAGCTTACCATAGACTTTGGTAGGTTAATACCAATAAAAAGCAGGGTATCGAGAGGTCAAGCTTACCATTTAATGTTTTAGCTTCATCAGGGTTTCCTTTTTCCTTCCAAACAGTATTCGACTAAATCAAAGTAACTCGTTAGTCTTTTGAGTCTGAACTTGCTGCCCGAACTTGCCCCTCTATCTGTACTGATCTTGGCATCTGCCAATATTAGCTGAGATCCAGGGTGTTCTAGGCTCATTTTCCTGGCTTCAACCTGCTTCTGGGTCATTCATGGGGCAGCTTGAATGTCCACTGGCTTTGGCTCTGACGCTAAGGGATGTTGAAGAGGGAAAGGAATCCCCAGGTAAAAGCAGAGCAATGCCAGGCTGGCAGAGAACTTAGTAAGGATGCAGATACAGGACACTCCCAGTTATCCTGCCCATGAGGTTCACACAGGGGTGACTGGGGTATGGCAAGAAATGTTAGCCTTGTGGTTCTGCTTGTCTCAATACTGTCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTTCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTCCCCTTTTTTTATTTTAAGAGCAAAGAATGCCAAACCAAATCCATCATAGCTTGCTTTTTGCATATGATCTTCTTTAGTATCTGATGGGAATCCTTTCCCATAAGGGAAAATAACACTGGGGTCAGGGTGAATGATATAATTCTGCTGAAGATGGATGGGCTAAGATGAGTTGGCTTCTGGGGAGCATCCAGGAAGATGCTGCTGCTGCCCTTGGTACTCACATTGAGGATCAAGGTTCTGGAGGCATGGTTCTCAACCTTAAATATACATTAGAGTGTTCTGCCAAGATTTAAAATTCTAGGTATCTTTGCTCAAGCGATGATCCAAATCAACCAGTGAGTTCAGAACTGTAGGGCCTCTTAGTCACTGCCCCTTAGAGAATTAGTTAGTACTGGCTGGCCTAGAAATCACTAAGTAGAAAAAGCTATCTTTGAATTCACAGCTATCCTCTGGCCTCTGCTTCCTGAGTGCTGAGTTAAATGCATGTACCATCACTCCTGGCTTCCCTCCAGGTTCTAATGAAAGACTATCATCGTGTGTCCTGCTATTGTTACATCTTCAAGAATTCACTTGGTTTATGGTTTTCCGCCCATAGGAGGGCCTTTACATTTAGTTTTGTTGATGGTTTGCTTTTTCCCCGGTGGGGCTGTGATTTTTGCACCTGTCTAACAGAGAACCTGGCCAGAGACTTGTTCCTCAAAATTGCCTCAGATTTAGGGGAGTTTGCTGATTATCCCAAACACTGTTCCTGAAGGTCCTTAGTCAAGTTGATACTTGAGATCCACATTACTCCGAGACAACTCCTGACCATTGGCCCTTGCCATGGGCTCTGCCTACCACTGGGCTGCACAGGGCCCGGGTTCTTAGGTCTGTTCCTATCTCTGTATTCCCTCCCATAACTTTGCAGTTGGCACTTGCTGACCCCTCCTGCTTATTTTCCCTTCTTGTATTTTCAGAGCCAAGTTTTCCATTTTGACTCTTTCTTCTCTGTTACATTCCACCCTAGGAAGATGAGCTTTCCACATAGCACCTACACTCTCTGCAGCGTGCACCCATATTTTCAGAAACCCAGTGAGAACATTTCTCCTCTTGCAATCTCGAGGTCTCTCCCTGGGTACTTTATTCAGCAGAAGCAGACTAACCCTGGGCTACCTTGGGTTCTTAGGAAGTACTGGTTCAACTGAGTGCCATATACCTTCTTGCTAACACCTCCTTTCTCTTCTTGTCTTTTTGCTTGTGACCTGTGGGGACGCCTGCAG
Seq C2 exon
TGCGAAGGACCTTGAAGAGTGGCCTGACTCCAGAAGAAGCCAGAGCCCTGGGCCTGGTTGGCACATCTGAACTGCAACTGTGACTTTTGTAGGTTCTCAGAAGTGTGCTGAGCAGAGGACCAGATCTGGCTAGACCTGCCCCTTTCAGTAGAGGCAGGGAGACTTGACCTGAACATCTGATGGTTAGAACTGAGTCCTCATTTCTGAGTAACACACTGCTTGTCACCGTTGCGCATTGACATGGATCTCCAGAAATCTCCTGCATGTACTTTATCAAGTCAGCTGTGTTTCTCTTGTTTCCTTGATACCTGGTTTATTAGCTCCAAGTGTGACACCTTTTCTAGGAAGCAACAGTCCTTGTAAGGAACAAATCACTTCTGTCACAGTTGTTAAGATAACATGGGGCAATGTGATTAGACTCAGAGACTGGGTCTCTACAACAACCAAATGTCCAGATATAAATGCCAATGCTGTACACACATACAAGCACAGCTTGTTTACCAGTTGTGGATTTTAGATGTACTAAATGTTTATACAAACTCATAAATGTACACTGTGTTTCAATGACTAAATAAATAGAGGTTAATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034295:ENSMUST00000037097:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.778
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types