DreINT0069090 @ danRer10
Intron Retention
Gene
ENSDARG00000075041 | fmnl2b
Description
formin-like 2b [Source:ZFIN;Acc:ZDB-GENE-041111-182]
Coordinates
chr6:13161813-13162285:-
Coord C1 exon
chr6:13162162-13162285
Coord A exon
chr6:13161929-13162161
Coord C2 exon
chr6:13161813-13161928
Length
233 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
TGGCTATTGTTTTGCTGCAGTGC
3' ss Score
7.07
Exon sequences
Seq C1 exon
TCGCCGTCTCACAAGGGTAAGCGGCAGCAGCAAGAGCTTATTCACGAGCTAAGAAAGAGACAAGGCAAAGACAGCCGCCTTGTTTATGAAGGCAAAGATGGAGCCATCGAGGACATCATTACGG
Seq A exon
GTAAGAGCCAAAGCCAATTTCATCTTGATGTACATACGACGATTGAATCTGTTTTCCTAAGTGTATATCATTCTTGTTATTTTGATAGTACACGTAGAGTAGCAGTAGATGCTATGCTGCTTAGCATTACTAGAGTTTAGAGGCTTGAAGTTTGTGTCTAATTCTGAGCCTTTTTTCTAAAGCTTGTAGCTTTTGGTGTTTCTGTGTTGTGATTGGCTATTGTTTTGCTGCAG
Seq C2 exon
TGCTGAAGACCGCCCCTTTTACCGCTCGATCAGCCAAACGCGGCTCGCGGTTCTTCTGTGATCCCGCTCTCTCCGAGGACTTCCATTACTAAACTAAACTCTGTCCCCTCAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075041:ENSDART00000151566:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.482 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCCGTCTCACAAGGGTAAG
R:
TCTGAGGGGACAGAGTTTAGT
Band lengths:
237-470
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]