Special

DreINT0069227 @ danRer10

Intron Retention

Gene
Description
formin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-081105-105]
Coordinates
chr8:11543597-11546481:-
Coord C1 exon
chr8:11546354-11546481
Coord A exon
chr8:11543740-11546353
Coord C2 exon
chr8:11543597-11543739
Length
2614 bp
Sequences
Splice sites
5' ss Seq
GAGGTACTT
5' ss Score
7.82
3' ss Seq
TGCATGTCTTCTGCACATAGTCC
3' ss Score
6.09
Exon sequences
Seq C1 exon
GGCTGGTTGACGGAGGTGGAGAGAAAGTTACTTGAAAAGGGATCAGAGTCCCAAAGAAGACAGAGCAGCCATTTTGATTCGCAGGGCAATACACCTCTTACAAACAACTACGGTCAAAACCGAGAGAG
Seq A exon
GTACTTCAGTCACTAGACAGCAGGGCCAAACATGATATAATGCATCAGAATAAATGTGTTAGATTTCTTTACAGGAGTCATGTAATGATATAACAGTTCAGCAATAGCTCATAAGCAGGAGTGCTGTTTTCATAAATAGAAGTGAGAATGATTTATGCAACAGTTCAACAAACAAGAAGTTAATACTGAGTTACATTTTGGACACAATACTGTCTGTTTTTTTTCTTGCATCTATGAAAATAGTTCTAAATCAGAGATGCCCAAACTAGGGCCCGCAGGCCAAAGTTGGCCAATGGTATTATTTGATTTGACCCACCTTCTCAGATGGGAACACAAATATAAATAAAGAAATGAAACAAAGAAATGCAAAATAAGAACATTTAAGTAAATAAACAAATATACAGAATTTAAACAAATAATTCATTAATAAATTACAACATTTTAATTATCTAATAGGGATATGTTTGAAGGAAATGCTTTTGACAGAGATTGTCATTTCTTATTTAACAAAAAAAGATTGTCTTATTGTTGAGTACAAAAAAAGCGAACTAAAATGAAATGTTGTAAATGAATACGATTTTTTAAGATGTAAATATAGTCACTCGATGATGACATCGGCAAGAAAAGGCAAAGGCAGGTGCAGCATAACTAGTGTATTCAGCATTGAACTCTGATGTGTTAGAAATGGGGATTGTTTATGTTTTTACTGTAATAAGTTCATTATAAAATCTTTTTAAATGTTACTGCATTAGGTAATGCAATTATTTTCTAATTAGTTTTAAGTCTTAGGAAATAAAAGAGGAAATTACTTCAGCAACTTTAACGCAATACAGTTTGGTATTTTTACCTTTGGCCCACAGCCTTCTATCAAGTTCAGTTTTTGGCCCTTTGTTTGGCCAACCCTGTTCTAAACAAAGCCCAAGCAGATTATCATTGAATATGAAAGTGAAAGCATGCTGAAATATTAGCGAGTGCTGTTTATTTGTTTGGAAAATTGACCGAAATGACCATCTGATCATTTTTTCATATTTATTCTAATAATATTTTGTATCGACCAGATTTTGTATGTTTTTCAGACATTTATCCATTAAAGTTAAATCAAATACAAGCAATTTAAATACAAACATTGTCAACAAATGACAAAACTAAAAAGTAAACTAAATTAAATAACTATTTAAACTAAAATTAAAAGGGAAAAACAAATGAATTATCGAGTATGATAGTGAAAGCATGCTGAAATATTAGCGAGTGCTGTTTATCCGTTAGGAAAATTGACCGAAATGACCATCTAATCATTTCTTCATATTTATTCTATAAATATTTTGTATTAAGCTTATTGTTTTGTTCATTTCTGTACTGAAAGCTCGAAAGAAAAAAAGTCATCTTCTTCATGATCTGACTGCAGTCTCGCTTCATCTGTCATTTCTCTTTACAATTTAAGTCTATAATGCATAATTTTAGCCAACGTTTATATATATATATATATAAATTGATTGATTCTATAGATTTTTGCAAAACTTGACAACTAAAATGAGGCCATGTATGAAAAAGTCTCTGATTTCTATTTGGTGATGCTGTATGTGGTTGTCAAAATTAAAGTGCACCTTTTCACTTATAATGTCTTATTACTTACCATCATAAATTAAAATAACGACAGCTGAGTGGAGTTTGTGGGACTCTGAAAAATCAACCCTGAAACTCTGAGCAATGTGAGGAGAGTTTACTCCCTCATGACTTGTTTATACTATTTGGTCAGTTTAGAAACTTTGCCGTGTGAAAGTAAACCGCACCAAGAACAAACTTAAACATTGCAACAATTTTAATCCCTGTTTTAGAAAAAAACAATCAATCTACAGGTGTGAAAGCACCTTATGAGTAACAGTGCAGTGTTTTAATACTGAACGGATCTCTTTTTGAACAAATCATTTGAGTCAATGATTCATTTATTCAACAAAAAGGTGATTCAAAATGAATCAGCCGTTTTGATCAAATCATTTGATCACACTATTCATTGGCACTTTAGGATATTGCCGCCATCTACTGTGGTTTTTATTGCTATTCATTTGTATCAGACACAAAATAAAAATTAAAAATAAATAAATGATGTCAACTACTTTACAAGCAAGCAGTATAAGACATTGTAACATTACTGTGTCTATGACATCAAAGTTCATTTTAGACAAAATAATAAAACTTTTGTGCTTCACGAGTGAAAATAGTTGCAAACAAAGCTGGAGCAGAACATTTGTGAACAACCTCTCAGAACAACACTGCAGTGTTTTGTTCTATATGAATCACTTTAGAACAAATCAATCGAGTCAGTAAATCAATGATTCAGTGATTCTTTCGTAAAGAGAGTCACTTGCTTTGTTCTTAATGAATCAGCCATTTTGAGCAAAGCATTTAAATGAATGATTCAGTGAATTTCCCATCAAACAGGTACTTGACGTCATCGGCTGGAGGATTGAGGTCATATTTATATATTCATGAAAGACAAAAATCGACAAAGCCCTACTTCACATGAGGCTTTGTAACCTGCATATTCTGCGTAATCTGAATATAACGCCAAAGTTAATTGAGTCTGTTTTACGTATTGCATGTCTTCTGCACATAG
Seq C2 exon
TCCGGATGGCAGCTACACGGAAGATCCCAGCACAGAGAACACGATGCAGTTCAAATCCCGCAGTACTGAGTTTGATGACGAGTTCGATGAAGAGGAGCCTTTACCCACCATTGGAACATGCAAAGCACTTTATCCATTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036156:ENSDART00000091752:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact

ORF disruption upon sequence inclusion

No structure available
Features
Disorder rate (Iupred):
  C1=0.791 A=NA C2=0.908
Domain overlap (PFAM):

C1:
PF154561=Uds1=PD(15.7=30.2)
A:
NA
C2:
PF146041=SH3_9=PU(11.8=12.2)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]