DreEX6048527 @ danRer10
Exon Skipping
Gene
ENSDARG00000036156 | fnbp1a
Description
formin binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-081105-105]
Coordinates
chr8:11540633-11546481:-
Coord C1 exon
chr8:11546354-11546481
Coord A exon
chr8:11543597-11543739
Coord C2 exon
chr8:11540633-11540791
Length
143 bp
Sequences
Splice sites
3' ss Seq
TGCATGTCTTCTGCACATAGTCC
3' ss Score
6.09
5' ss Seq
AAGGTAATA
5' ss Score
8.49
Exon sequences
Seq C1 exon
GGCTGGTTGACGGAGGTGGAGAGAAAGTTACTTGAAAAGGGATCAGAGTCCCAAAGAAGACAGAGCAGCCATTTTGATTCGCAGGGCAATACACCTCTTACAAACAACTACGGTCAAAACCGAGAGAG
Seq A exon
TCCGGATGGCAGCTACACGGAAGATCCCAGCACAGAGAACACGATGCAGTTCAAATCCCGCAGTACTGAGTTTGATGACGAGTTCGATGAAGAGGAGCCTTTACCCACCATTGGAACATGCAAAGCACTTTATCCATTTGAAG
Seq C2 exon
GTCAGAATGAAGGCACTATATCCATGGCCGAGGGCGAGATGCTGTATGTAATCGAGGAGGATAAAGGGGACGGATGGACCCGCGTGCGCAGAAATGAGGACGAGGAGGGTTACGTGCCCACATCCTACATCAAACTCTTTTTGGACACCAATGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036156-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.791 A=0.908 C2=0.661
Domain overlap (PFAM):
C1:
PF154561=Uds1=PD(15.7=30.2)
A:
PF146041=SH3_9=PU(11.8=12.2)
C2:
PF146041=SH3_9=PD(86.3=81.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GGTTGACGGAGGTGGAGAGAA
R:
GTAGGATGTGGGCACGTAACC
Band lengths:
252-395
Functional annotations
There are 2 annotated functions for this event
PMID: 14596906
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mutation analysis, two hybrid, x-ray crystallography. ELM ID: ELMI002056; ELM sequence: DRESPDGS; Overlap: PARTIAL_LEFT
PMID: 22153077
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mutation analysis. ELM ID: ELMI002056; ELM sequence: DRESPDGS; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]