RnoEX6016352 @ rn6
Exon Skipping
Gene
ENSRNOG00000008258 | Fnbp1
Description
formin binding protein 1 [Source:RGD Symbol;Acc:621350]
Coordinates
chr3:9865677-9868831:-
Coord C1 exon
chr3:9868710-9868831
Coord A exon
chr3:9868308-9868444
Coord C2 exon
chr3:9865677-9865835
Length
137 bp
Sequences
Splice sites
3' ss Seq
TGTCTTCCTCTCTTGAGCAGCCC
3' ss Score
7.07
5' ss Seq
AAGGTACCG
5' ss Score
9.67
Exon sequences
Seq C1 exon
GCCTGGCTGGCTGAGGTGGAAGGCAGACTCCCAGCTCGGAGTGAGCAGGCACGCCGGCAAAGTGGGCTGTACGACGGCCAGACACACCAGACGGTCACTAACTGCGCCCAGGACCGGGAGAG
Seq A exon
CCCAGATGGTAGTTACACAGAAGAGCAAAGCCAGGAGAGCGAGCACAAGGTGCTGGCCACGGACTTCGACGATGAGTTCGACGATGAGGAGCCGCTTCCTGCCATCGGGACCTGCAAGGCCCTCTACACCTTTGAAG
Seq C2 exon
GTCAGAACGAAGGCACCATTTCGGTAGTTGAAGGAGAAACGCTGAGCGTGATTGAGGAGGACAAAGGCGATGGGTGGACACGCATCCGCAGAAACGAAGACGAGGAGGGTTACGTCCCCACTTCCTACGTCGAAGTCTATTTAGACAAAAACGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008258-'29-28,'29-26,30-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.776 A=0.781 C2=0.659
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(12.0=23.8),PF154561=Uds1=PD(12.7=23.8),PF0218511=HR1=PD(1.6=2.4)
A:
PF0001823=SH3_1=PU(12.5=13.0)
C2:
PF0001823=SH3_1=PD(83.3=74.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGTGGAAGGCAGACTCC
R:
GACGTAGGAAGTGGGGACGTA
Band lengths:
243-380
Functional annotations
There are 2 annotated functions for this event
PMID: 14596906
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mutation analysis, two hybrid, x-ray crystallography. ELM ID: ELMI002056; ELM sequence: DRESPDGS; Overlap: PARTIAL_LEFT
PMID: 22153077
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mutation analysis. ELM ID: ELMI002056; ELM sequence: DRESPDGS; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]