GgaEX1025309 @ galGal3
Exon Skipping
Gene
ENSGALG00000004088 | FNBP1
Description
NA
Coordinates
chr17:6295336-6297075:-
Coord C1 exon
chr17:6296954-6297075
Coord A exon
chr17:6296362-6296498
Coord C2 exon
chr17:6295336-6295494
Length
137 bp
Sequences
Splice sites
3' ss Seq
TATTTTCCTCTCTTGAGCAGCCC
3' ss Score
5.87
5' ss Seq
AAGGTATCG
5' ss Score
8.7
Exon sequences
Seq C1 exon
GGCTGGCTGGCCGACGTGGAGGGCAGGTTGCCCGCACGGACTGAGCAGGCCCGGCGGCAGAGTGGGCTGTATGAAGCCCAGAACACATCAGCAGTGAACAGCTGTGCACAGGACCGGGAGAG
Seq A exon
CCCGGATGGCAGTTACACAGAAGAGCAAAGTCAGGAGACTGAGATGAAAGTACCCGCAACAGATTTTGATGATGAATTTGATGATGAAGAACCACTACCAACCATAGGAACGTGTAAAGCTCTCTATACGTTTGAAG
Seq C2 exon
GTCAGAATGAAGGAACAATTTCTGTAGCAGAAGGAGAAATGCTCTATGTAATAGAAGAAGACAAAGGTGATGGGTGGACACGAATCCGAAGGAACGAAGATGAGGAGGGCTATGTCCCTACGTCTTATGTTGAAGTCTATTTGGACAAAAATGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088-'22-27,'22-26,23-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.780 A=0.739 C2=NA
Domain overlap (PFAM):
C1:
PF143891=Lzipper-MIP1=PD(10.7=22.0),PF154561=Uds1=PD(11.4=24.4),PF0218511=HR1=PD(0.1=0.0)
A:
NO
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTGGAGGGCAGGTTG
R:
CAACATAAGACGTAGGGACATAGCC
Band lengths:
242-379
Functional annotations
There are 2 annotated functions for this event
PMID: 14596906
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mutation analysis, two hybrid, x-ray crystallography. ELM ID: ELMI002056; ELM sequence: DRESPDGS; Overlap: PARTIAL_LEFT
PMID: 22153077
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mutation analysis. ELM ID: ELMI002056; ELM sequence: DRESPDGS; Overlap: PARTIAL_LEFT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]