GgaEX0005472 @ galGal3
Exon Skipping
Gene
ENSGALG00000004088 | FNBP1
Description
NA
Coordinates
chr17:6296362-6298050:-
Coord C1 exon
chr17:6297918-6298050
Coord A exon
chr17:6296954-6297075
Coord C2 exon
chr17:6296362-6296498
Length
122 bp
Sequences
Splice sites
3' ss Seq
CTGCTGCTTTTCAATGGCAGGGC
3' ss Score
8.09
5' ss Seq
GAGGTACAG
5' ss Score
6.62
Exon sequences
Seq C1 exon
AGATGCCTTAACAAAGATGAAAGATGTGTATATCAAGAACCCACAGATGGGAGACGCAGCGAGTGTGGACCACAGATTATCAGAACTTGAACAGAACATTGAAAAGCTACGATTAGAAGTGCAGAAATTTGAG
Seq A exon
GGCTGGCTGGCCGACGTGGAGGGCAGGTTGCCCGCACGGACTGAGCAGGCCCGGCGGCAGAGTGGGCTGTATGAAGCCCAGAACACATCAGCAGTGAACAGCTGTGCACAGGACCGGGAGAG
Seq C2 exon
CCCGGATGGCAGTTACACAGAAGAGCAAAGTCAGGAGACTGAGATGAAAGTACCCGCAACAGATTTTGATGATGAATTTGATGATGAAGAACCACTACCAACCATAGGAACGTGTAAAGCTCTCTATACGTTTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004088_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.622 A=0.780 C2=0.739
Domain overlap (PFAM):
C1:
PF122293=PG_binding_4=PD(41.4=91.1),PF143891=Lzipper-MIP1=FE(52.4=100),PF154561=Uds1=FE(50.0=100),PF0218511=HR1=FE(71.0=100)
A:
PF143891=Lzipper-MIP1=PD(10.7=22.0),PF154561=Uds1=PD(11.4=24.4),PF0218511=HR1=PD(0.1=0.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTAACAAAGATGAAAGATGTGT
R:
CACGTTCCTATGGTTGGTAGTGG
Band lengths:
244-366
Functional annotations
There are 2 annotated functions for this event
PMID: 14596906
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mutation analysis, two hybrid, x-ray crystallography. ELM ID: ELMI002056; ELM sequence: DRESPDGS; Overlap: PARTIAL_RIGHT
PMID: 22153077
Partially encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: coimmunoprecipitation, mutation analysis. ELM ID: ELMI002056; ELM sequence: DRESPDGS; Overlap: PARTIAL_RIGHT
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]