DreINT0083360 @ danRer10
Intron Retention
Gene
ENSDARG00000028222 | itgb8
Description
integrin, beta 8 [Source:ZFIN;Acc:ZDB-GENE-071213-3]
Coordinates
chr19:2461030-2463322:+
Coord C1 exon
chr19:2461030-2461119
Coord A exon
chr19:2461120-2463175
Coord C2 exon
chr19:2463176-2463322
Length
2056 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TATGTGTGTGTGTCCTGCAGAAG
3' ss Score
10.44
Exon sequences
Seq C1 exon
GATTTAGTGGATCTGATTCCTGGAAGTTACGTGGGTCGACTGTTTCCCAAAGCATCTAATCTGAAAGATCTAGTAGTGCAGGCCTACAAG
Seq A exon
GTAAACCACAACGCTTTCACTTTCACTGTAAGATAAGAAGTAAACATCTTATTCCCTACATTACTTCAAGGACGATCAGAACAGAAGTTCCCAAAAGTTTCATAACGCTCAGTTTCAGTAAGAGGAAAAACACTGGCTTTGATTCCAGCATGCGTTTACAGGAACACTCCACTTTTTAAAACATAAATAGGCTCTCATAAAGTTAAATAGTAGATTTTACATTTTTTTTAATCCATACAGCCAATCTCTGTGTCTGGCGGGAGCAGTTTTAGCTTAGCTTAGCAAAATGAATTGAATCAGATTAGACCATTAGCATCTAGCTAAAAAATGGCCAAAGAGTTTTGATAATTTAACTATTTAAAGCTTGATCATTTACTAAGACCAATAGTAAAAATAAAAGAAATTCAGCCAATGATGAAACTGTACTATCCAGCATAATAATCAAAGATGAGAATGAGTGTATACTGTAGTTCCTATAACCATATATCAGCCTAAAAAATAGCACCGTTTCATTTTCCATCTGTCTTAGTACACGATGTAACTACAGAGAAGTCAAGCTTAAAATAGGAAAATTATCAAGACTTTTTGGTCATTTATGAGCGAGATGCTAATGGTCCAATTCGATTCAATGAATTATGCTAAGCTAAGCTAAGCTAAAAGTGCTTGCTCCAGACTCAAGGATCGGCTGAATGGATTTTAAAAAGGGTAAAACCCAACTGTTTAACTTTAGGAGAGCTGTAAAATGGAAATAAAGTGTAGAATTCCTTTAAAAATAAAAAAGAATAATCTCTTAAATCTCTGTGATTCCAGCATGTGTTTACAGGAACACTCCACTTATTTAAAATATAAATAGGCTCATTTCACAGCTTTCATTGAGCTAAATAGTTGACATTTTTTTAATCCATTCAGCCAACATCCAGGGCTGACGGGAGCACTTTTAGCTTAGCTTAGCATAATGAATTAAATCAGATTAGACCATTAGCATCCTGCTAAAAAAATGCCCAGAGTTTTGATGATTTAACTATTTAAAGCTTGACTCTTCTGTGGTAACATCGTGTACTAAGACCAATAGAAAACTTTAATTTTAATTTTCTAGGCTGATATAGGAACTATACTCTCATTCTAGCATAATAATTAAGGATGAGGATGATAATATAGTTCCTATTGCCATATATCAGCCTAGAAAATAGAAAGGTTTCATTTTCTTCTTCGTGCATACTAAGTACTCAGTGTGAAACTACATAAAAGTCAATTCATTCATTTTCCTGTCAGCTTGGTCCCTTTATTAATCCGAGGTCGCCACAGCAGAATGAACCGCCAACTTATCCAGCATGTTTTTACACAGCGCATGCCCTTCCAGCCGCAATCCATCTCTGGGAAACATCCACACACACACTCATTCACATACACACTCATACACTTTGGACTGTGGGAGAAACCAGAGCACCCAGAGGAAACCCACGCAAGTGCAGGGAGAACATGCAAACTCCACACAGAAACGCCAACTGATCCGAGGCTCAAACCAGCGACCCAGCGACCTATTTGCTGTAAGGCGACAGCACTACCTACTGCGCCACTGTGTCACCAAGAGTCAAGTTTGAAATAGTAAAAAAAGTACTTTGTGGTCATTTTTGAGTAAGATGCTAATGGTCTAATCCAATTCCATTCATTATGCTAAGCTAAGCTAAAAGTGTTCCTGCCCATCCCTGAGATGGGCTGAATGGATTCAAACATTATAAGATTCAACTGTTTAACTATAGTAAAGCTGTAAAATAAGCCTATTTCCAAAAACAAGTGTGGTGCTCCTTTAAGACCAGGAATAATCTCTGCTCAGGCACAACAATGTATTGTCCTCCCTGAAATCCACTGATACCACTGAACAGTAGCCTGCTTTATAAATGCCTCTGACTGCCTGCACCAAAAATGCTGCGGCAAAGAGCTGCTATTTTTAGCCGTTCCCCCCTGAACCTGCTTATACAAGAGGCTGCAGGTCAGACAATGGGCTCTTTCTGCTGTGCTCTGCTCATGCGTATGTGTATGTGTGTGTGTCCTGCAG
Seq C2 exon
AAGCTGCTGTCGGATGTGGAGGTGCAGATGGAGCTGCAGGACCCCCAGCAGGCTGAGCGTTTCTGGGTGAACGTCAGCGCGATCTGCCCTGGAGGATCCTCCGCTGCCGGAAACAGCAAATGCTCCGGCGTTCAGCCCAAACAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028222:ENSDART00000136138:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(9.1=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(15.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]