MmuINT0084235 @ mm10
Intron Retention
Gene
ENSMUSG00000025321 | Itgb8
Description
integrin beta 8 [Source:MGI Symbol;Acc:MGI:1338035]
Coordinates
chr12:119173286-119177084:-
Coord C1 exon
chr12:119176995-119177084
Coord A exon
chr12:119173421-119176994
Coord C2 exon
chr12:119173286-119173420
Length
3574 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AAAAATTGATGTCTCTGCAGAAG
3' ss Score
5.78
Exon sequences
Seq C1 exon
GACCTTCTGCCCCTTTTGCCTGGTGCCATTGCTGGTGAAATAGAATCCAAAGCTGCAAATCTCAACAATTTAGTAGTAGAAGCCTACAAG
Seq A exon
GTATGTTGTACAGTCTATAAATTTTTCTACAAGTCAGCTTTTACTACCATTTTTTTTAGACAAGGTACAAAGCAGCACTGCTGCATCTTGCAAGGAGTGACAGAAAGAATGAAAGACTAGGAATTTAGAGCTGGGGTTACCATTGGATGGACCACAGACTAGCAATGATGTCAAATGCTTGAAAGAGTCAGGTCTGTCTCTGTACCTCATTTGTCCCACAGAGAGGTGCGCTAAGATTGATCCCGCCATCTAAGCTTCCTTTCAGATTGAGAGTTGAGTGAGTTACCATCTTGTTGCAAAACTTTGTATAGTTTCCTACATCATAAATTTAACAAAAACAAGCCAAAAATATTGTGCTATTATTTAAAGAACAATCTACAGGGGTAAGTGGATTCCTCAGGATCTAGAGATTACTAAGAGGGCTTTGTAAGAGTATCCATGATCAGTCATTGCAGTGTTCCAGTCAATTATCTTTTCTTTTTTGTCAAAACAGGCCAAAGTTTCACTTTCCCAGATGTTTTCTTGGACCATTGGTTATATGTTGTCATCAGTCCTGTAGAGAATAGATGCAAGAAGTTTTAAGGGAACATCTGGTCTCTCAAACTGGATCATGTCTGCATTAAAAGGCTTTAGTAAACTTTGCTAATACTGACTTTTCTTTTCATGCCAGTCATTTTCCATACATGACTTCACTCAATCCACACACCTGCTCTATTGGGCAGCAATTAGTAGCCCCATTGTATATTTAGGAACAGAAAAGTATTGACCACGGTCCACACAGCTAATAAACAGGCAGCAGGATGAAATTCCAGGTGCTACTCTATGCCTCAGCTGCTTCCAGCTGTACGGCCTGTTTATCTTTTGTCCTTTGATTTTTTTTTAAATAGGTGTTAAAAACTATGCTTTATTCTCCCATGGACTTATTGGCCAGTTATAAGGCCTGGCTTCTCCAGATTTTCTGCCTGCCTGGTTGCCTGACATTTAGAATTATTGTTGCCTGAGCCACAGAGCTGTGAACCCCATAGGCAGCTTTGTTAACTGTCTTCAGGCCGCACCTGCTTGAAACTTGGGTTCAAAGAGGAAGGTGGGAAACAGACATAGGGCAGAAAATGAAGAAATTGTTTAAATGTATTCTTCTTTAAAGAAAATAAATCTTGATAGATTTGTTTCTGCAGAAAACTTTTTACTGTCTGAAAACTACAGAGAATTAAATGAACACAAATATCTTAAATTAAATCTTTTACTACCATAAAAATAATATTAAATCCTAGGACTGGAGAGACAGCTCAGTAACTAAGAGTACTTGCTGTTCTTCGAGAGAATGGAGATTCAGTTCCCAGCACCCACATGGTGGATCAGAACGATGTCTATGAACTATAGTTTCAAGAGATCTGTCATCACCCTTTTCTAGCCTATATCAGCACTGCATTTGCTTACATACATACAGACAAAACATTCATATGTGTTTTTTTTTCAAATGTTAGATTCATGGAATTTTATATCAAGAAAAGCAAAACATACCCATACTTCATTTCTATCCATAGTTTGTTCTTAAGAGTCATCCAAATGAAAAGGGAGTTTATGCAATTAGTCCTTTTAATTACTACAGTGTATCTGTTTTATTAACCTGAAGTATATAAATTGGCTTCTATTCTATTCTATTGTATTGTTTGTTTGTTTCATAAGCCCAGTTTAGCCTTAGAATCTTGATACTGCTGCCTCAGCCTCCTCCTGGGTCCTAGAATGATAAGCATGTACCACCACATCTAGCTTTTTAAAAATCTTTGTGTTTTAAAAAAAGTGAGGCAGTAAGCTATGAGTGAGACTTTGTCTCAAACAGTAAAAGCAGACAGCACTATTTGGCCTTATGTTCTTTGCCTTGTGCAGGTATGTAGTCACATACCTGTTAGCCTACTGTGGTTCCATGCAGCCTTGCAGTGAAAGAATAATAGTTAACACAACAAAAACTTATTTTGGCTAAGTTAATCTCCTTGAGATTCGATTACTACTATTTTTATGTGTCTATGTCTTCAAAATTCTTTTTAAAGAATAATACAGTTTCAAAATTGTATTATTAAAATCCCAACAGAGACAATTCATAATTCATTGAAGTATTATGCATCCAGAAAAAAAAATGGGGTCTTTCCCAACAACTCTTAGACATGAATAGCATCTGTCCTAGCACCTCTCAGAGAGTAAAGAAGTTTAATAGTTCCCCAGAACCTTGACTTGCAAAGCAAAGGACAGAAAATATTGTAGAAAAATTTCTTCATACAATACTTCAAAGACATAAGTGGTTTGAGAACTTAGAGGAACTGCAAGTGTGGCTAATGTGCTGCTATGGGAGACATGTACTGACCAAAGAAACCAATGCATATCCAAATTAGATTACACCTTTGTAAGGTTCTTCTAGCTTGCCAGAATTACTTGCAGTATATGAACTCTTGGGGGAGAGAAAAGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTTCACCTACTTGAATAATATTCATGAACTTGAGGAAAGCATCTTCTTTTGAGGACATGCTATCAGAATTTCATAATCAATTATTCATCAGTAAAAACTCATCTCATATCAAAGCTATTGTTGAAGGAGTAAAGTTACTTTAACTAAAACATTGGAAGCCTGTCTAAGTCTTTTCCTCCAGGGTACAACCCATTCTCCTTTCATAGCCACATATTTCACATCACTGTTATTTTTCTTTATAAGTTTAAAATCAGGATTTTTGCATGTGCCAGGCTCAGATGTATATGACCAAATGCACACATATTTAAAAGATATATTTAAAGTAGTTGGATCCTTTGGAACTGTAATATTGTGATGGAAGGCCTTAGTGTGTGCCCAATACTTGACATCAAGCAGTAGATGTTTAATGAGTGAGTCATTTAATGAATGACTGTGTAAATTAATTCATGGTACTGTACCCTATATGAAGCCCTGCTTTAGAATTAAGGCAAACATCATGGATGCAAGCAAGCATAGAGATGATAAAATCCGTAAGCCCATCTTAGAGAAACTTGTACAACAGTGTTTCACCAGTGATTCCTATGCACAGTCAGTTTAGAAATGCCACCCCCACAAAACTGTTTCAACTATGTATTTATAAAACACTTAACGTTTCATGATAGTCAAAATCATTTGAAATTCAAGTTTCATTTTTGCCAAAACCATGTTTCCTGCTGTAAATTGTCAGAATTCATCAGCTATGAGAATGTTTCTTTAAACTTCATCATTAAATATCATCAGTATGAATTTGAAAAATTATCTTTGCCACACTGGATAAGAGAGGTATTTCTATAGGGTTTTAAATTTGTGATCATAGATATGTGGAAAAATCAACTATTTAAAACAGCTGATCATTTAGTATTTCATATGTTTTAAATATAATTGAGCTGTTGTGAGAAGCTACCATTTTATTCATTTCCCAGATGTAGACTTTGATTAAAGTTAAATATTAAATCCAGGATGGCATAATGATTATAAGTCTGCTTTGTCGCTTATACTAGAAACTACTTCAGTGTAATTAAAAATTGATGTCTCTGCAG
Seq C2 exon
AAGATTATCTCAGAAGTAAAAGTGCAGCTGGAAAACCAGGTACACGGTGTCCATTTTAACATCACTGCCATCTGTCCAGATGGGGCCAGAAAGCCAGGCATAAGTGGGTGTGGAAACGTGACAAGCAATGACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025321:ENSMUST00000026360:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.052
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(17.0=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types