MmuINT0084235 @ mm9
Intron Retention
Gene
ENSMUSG00000025321 | Itgb8
Description
integrin beta 8 [Source:MGI Symbol;Acc:MGI:1338035]
Coordinates
chr12:120411759-120415557:-
Coord C1 exon
chr12:120415468-120415557
Coord A exon
chr12:120411894-120415467
Coord C2 exon
chr12:120411759-120411893
Length
3574 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
AAAAATTGATGTCTCTGCAGAAG
3' ss Score
5.78
Exon sequences
Seq C1 exon
GACCTTCTGCCCCTTTTGCCTGGTGCCATTGCTGGTGAAATAGAATCCAAAGCTGCAAATCTCAACAATTTAGTAGTAGAAGCCTACAAG
Seq A exon
GTATGTTGTACAGTCTATAAATTTTTCTACAAGTCAGCTTTTACTACCATTTTTTTTAGACAAGGTACAAAGCAGCACTGCTGCATCTTGCAAGGAGTGACAGAAAGAATGAAAGACTAGGAATTTAGAGCTGGGGTTACCATTGGATGGACCACAGACTAGCAATGATGTCAAATGCTTGAAAGAGTCAGGTCTGTCTCTGTACCTCATTTGTCCCACAGAGAGGTGCGCTAAGATTGATCCCGCCATCTAAGCTTCCTTTCAGATTGAGAGTTGAGTGAGTTACCATCTTGTTGCAAAACTTTGTATAGTTTCCTACATCATAAATTTAACAAAAACAAGCCAAAAATATTGTGCTATTATTTAAAGAACAATCTACAGGGGTAAGTGGATTCCTCAGGATCTAGAGATTACTAAGAGGGCTTTGTAAGAGTATCCATGATCAGTCATTGCAGTGTTCCAGTCAATTATCTTTTCTTTTTTGTCAAAACAGGCCAAAGTTTCACTTTCCCAGATGTTTTCTTGGACCATTGGTTATATGTTGTCATCAGTCCTGTAGAGAATAGATGCAAGAAGTTTTAAGGGAACATCTGGTCTCTCAAACTGGATCATGTCTGCATTAAAAGGCTTTAGTAAACTTTGCTAATACTGACTTTTCTTTTCATGCCAGTCATTTTCCATACATGACTTCACTCAATCCACACACCTGCTCTATTGGGCAGCAATTAGTAGCCCCATTGTATATTTAGGAACAGAAAAGTATTGACCACGGTCCACACAGCTAATAAACAGGCAGCAGGATGAAATTCCAGGTGCTACTCTATGCCTCAGCTGCTTCCAGCTGTACGGCCTGTTTATCTTTTGTCCTTTGATTTTTTTTTAAATAGGTGTTAAAAACTATGCTTTATTCTCCCATGGACTTATTGGCCAGTTATAAGGCCTGGCTTCTCCAGATTTTCTGCCTGCCTGGTTGCCTGACATTTAGAATTATTGTTGCCTGAGCCACAGAGCTGTGAACCCCATAGGCAGCTTTGTTAACTGTCTTCAGGCCGCACCTGCTTGAAACTTGGGTTCAAAGAGGAAGGTGGGAAACAGACATAGGGCAGAAAATGAAGAAATTGTTTAAATGTATTCTTCTTTAAAGAAAATAAATCTTGATAGATTTGTTTCTGCAGAAAACTTTTTACTGTCTGAAAACTACAGAGAATTAAATGAACACAAATATCTTAAATTAAATCTTTTACTACCATAAAAATAATATTAAATCCTAGGACTGGAGAGACAGCTCAGTAACTAAGAGTACTTGCTGTTCTTCGAGAGAATGGAGATTCAGTTCCCAGCACCCACATGGTGGATCAGAACGATGTCTATGAACTATAGTTTCAAGAGATCTGTCATCACCCTTTTCTAGCCTATATCAGCACTGCATTTGCTTACATACATACAGACAAAACATTCATATGTGTTTTTTTTTCAAATGTTAGATTCATGGAATTTTATATCAAGAAAAGCAAAACATACCCATACTTCATTTCTATCCATAGTTTGTTCTTAAGAGTCATCCAAATGAAAAGGGAGTTTATGCAATTAGTCCTTTTAATTACTACAGTGTATCTGTTTTATTAACCTGAAGTATATAAATTGGCTTCTATTCTATTCTATTGTATTGTTTGTTTGTTTCATAAGCCCAGTTTAGCCTTAGAATCTTGATACTGCTGCCTCAGCCTCCTCCTGGGTCCTAGAATGATAAGCATGTACCACCACATCTAGCTTTTTAAAAATCTTTGTGTTTTAAAAAAAGTGAGGCAGTAAGCTATGAGTGAGACTTTGTCTCAAACAGTAAAAGCAGACAGCACTATTTGGCCTTATGTTCTTTGCCTTGTGCAGGTATGTAGTCACATACCTGTTAGCCTACTGTGGTTCCATGCAGCCTTGCAGTGAAAGAATAATAGTTAACACAACAAAAACTTATTTTGGCTAAGTTAATCTCCTTGAGATTCGATTACTACTATTTTTATGTGTCTATGTCTTCAAAATTCTTTTTAAAGAATAATACAGTTTCAAAATTGTATTATTAAAATCCCAACAGAGACAATTCATAATTCATTGAAGTATTATGCATCCAGAAAAAAAAATGGGGTCTTTCCCAACAACTCTTAGACATGAATAGCATCTGTCCTAGCACCTCTCAGAGAGTAAAGAAGTTTAATAGTTCCCCAGAACCTTGACTTGCAAAGCAAAGGACAGAAAATATTGTAGAAAAATTTCTTCATACAATACTTCAAAGACATAAGTGGTTTGAGAACTTAGAGGAACTGCAAGTGTGGCTAATGTGCTGCTATGGGAGACATGTACTGACCAAAGAAACCAATGCATATCCAAATTAGATTACACCTTTGTAAGGTTCTTCTAGCTTGCCAGAATTACTTGCAGTATATGAACTCTTGGGGGAGAGAAAAGTAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTTCACCTACTTGAATAATATTCATGAACTTGAGGAAAGCATCTTCTTTTGAGGACATGCTATCAGAATTTCATAATCAATTATTCATCAGTAAAAACTCATCTCATATCAAAGCTATTGTTGAAGGAGTAAAGTTACTTTAACTAAAACATTGGAAGCCTGTCTAAGTCTTTTCCTCCAGGGTACAACCCATTCTCCTTTCATAGCCACATATTTCACATCACTGTTATTTTTCTTTATAAGTTTAAAATCAGGATTTTTGCATGTGCCAGGCTCAGATGTATATGACCAAATGCACACATATTTAAAAGATATATTTAAAGTAGTTGGATCCTTTGGAACTGTAATATTGTGATGGAAGGCCTTAGTGTGTGCCCAATACTTGACATCAAGCAGTAGATGTTTAATGAGTGAGTCATTTAATGAATGACTGTGTAAATTAATTCATGGTACTGTACCCTATATGAAGCCCTGCTTTAGAATTAAGGCAAACATCATGGATGCAAGCAAGCATAGAGATGATAAAATCCGTAAGCCCATCTTAGAGAAACTTGTACAACAGTGTTTCACCAGTGATTCCTATGCACAGTCAGTTTAGAAATGCCACCCCCACAAAACTGTTTCAACTATGTATTTATAAAACACTTAACGTTTCATGATAGTCAAAATCATTTGAAATTCAAGTTTCATTTTTGCCAAAACCATGTTTCCTGCTGTAAATTGTCAGAATTCATCAGCTATGAGAATGTTTCTTTAAACTTCATCATTAAATATCATCAGTATGAATTTGAAAAATTATCTTTGCCACACTGGATAAGAGAGGTATTTCTATAGGGTTTTAAATTTGTGATCATAGATATGTGGAAAAATCAACTATTTAAAACAGCTGATCATTTAGTATTTCATATGTTTTAAATATAATTGAGCTGTTGTGAGAAGCTACCATTTTATTCATTTCCCAGATGTAGACTTTGATTAAAGTTAAATATTAAATCCAGGATGGCATAATGATTATAAGTCTGCTTTGTCGCTTATACTAGAAACTACTTCAGTGTAATTAAAAATTGATGTCTCTGCAG
Seq C2 exon
AAGATTATCTCAGAAGTAAAAGTGCAGCTGGAAAACCAGGTACACGGTGTCCATTTTAACATCACTGCCATCTGTCCAGATGGGGCCAGAAAGCCAGGCATAAGTGGGTGTGGAAACGTGACAAGCAATGACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025321-Itgb8:NM_177290:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(7.0=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: