GgaINT0090895 @ galGal3
Intron Retention
Gene
ENSGALG00000010875 | F1NE25_CHICK
Description
NA
Coordinates
chr2:30033366-30036194:+
Coord C1 exon
chr2:30033366-30033455
Coord A exon
chr2:30033456-30036059
Coord C2 exon
chr2:30036060-30036194
Length
2604 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AAGTTGCTTTCTGGTTACAGAAA
3' ss Score
5.03
Exon sequences
Seq C1 exon
GATCTGTTACCTCTGTTGCCTGGTACTGTTGCGAGACAGATAGAATCACAAGCAGCAAATCTCAATGATTTGGTGGTAGAAGCTTATCAG
Seq A exon
GTATGATCAGAATGACTGTGCTGGATGCTGTCTCTGTACAGGTTTTTTTTTTACTTTTCACACTCTAGAGCCTAAAATTGGAATTTCCAGGCCCCTATATAAAGTCCACGTTTCCTACTTTTCTGAATGTCCAGGTTGGTGGGTGACTGTATCCCTAAACAACTCTCAAATTCCCAGGCTGTTGGCTTTCCAAAATCAAGAGCTAATTTTATGCTAAGGATGCTCCTTAATACAGCGTTTGATTGTTTGCACCTTTTGCCATGTTACTTCCAAAGAAATTTCTGTTTCATTTGTATTTTTGGATCTCAGATCTTTGGTTACGTGCCAGACACTACTGCCTAGCTACCATAAAAATTCAGAGCAAAAGGACACTGCAATATTTATAGGGTTTTACCTCATAATTCTTAGAAAATTATGTAAATTATGTAAATTTCCATTTTACAAGGACGTAGTTTGACAACAGCAAGAATTGTGGAAAGCAGCATTTACATTGCACAGGGCAGCATAATGTCTCAGGGTTTTAATACATTGCAGTGAAGATAAGTTTTGATAGGGATTTGAGAGAGAACAAAGGAAATGGCTCTGTGTGCTTCTGCGTAGAGTTCTCAACTAGAAGTAGTACTATGGGAAAAAGCAGTTTCACAAATGATTGCTGAGGAATGTCAGCTTTTAAGGGAAGACTGTCATCTTGATAATGAGTGGAAGAGGGGATAAACAGCTTTAAAATGAAGCTATGTGGTATACATTTGATCCACTAGAGCAAAGGGAGCGCATAGAGCAGGAGTGAAATAAAAATAATAGGCTAGATAGCTGAATGCTTTCCAGGTGTGCAAGTTACATAAATATGCAAGGTTAAAAAGTTAGAAAATTAGTTATAAGCCTATATGCGAGGTATCTGTGTGCATCACATTAATTTTGATTATTTGGAGATGAAATTGCCCATTATGCTAGGTTAACCATCTAAATGAGGCTCTTCGGTTGCTTTCAGCAAATTAGCTCTAATGAGGAGCCAAGTCCCATGTCTGTTAGTAGTGGTAGAGTGGGCTTGTGTGCGTTTTCACAATGTCATATTGGAAACATTGTGCAGACGCCAAAGACATTCAAAAGCAGAGAAAGTATAATCAAATTGCAGATATATTCTCCCTGGTATTAGATTTTCTCTTCTAAATCAAGAAATCTCATTTTGAAAATAGATATTTGCAGGAAATAGTGAAATACTGCTTGCAAAAAATAATAATAATAATAATAATTTGCAGATCATGGTTCTTCTGAATGCCACTTTTACACTGTCCACCCTTAATTGTATCCAAGTTTTTACAGGATAATCCAGGGCAAGCATTCAAGAAGAGGAAATAAAAATTTACAAAATAATCCTTTCTGTTAAATAGAAGATTCTGTGGGACTTTCCTTCTCCAGCCACCCCCAGTTTGTTCTTGCTTTATTTTCTTTTTTTTTTTGGACAGTATCATCCTTCCTATCTTAAACTGCACTGGATTTGATACTTCTGAATACTTTTGTCATGGTTTTAGTTTCTTGTAATATACAAACAACACAGTGAACAGGGTTTGAATGTTTTGCCTTCATGATAGCATAAGTATTTACATAAGAAAATTTAGTGTTGATGTTTGATGGCAGTGGGCCTCTTGTACTCTTGTTCTAAGCAGGGAAGCCTTAGGCTCAGTTGTGGAAAACCTTGCCTGGAAATCCCTAAAAAAACAAAGATGAGTCACTACTTTTGAAAAAGTTACTTAGCTAAACATGTGTTCAGATTCATATAATTAAATTTTCATTTGCAACAGTAATGTCCCACAAAACTAATTTTAAAAATACTAAGATGCAAGGAATGTTACTGTTTGTAAGGAAATTTAGTAATCTCTTGGTGCAATAAATTTTTACAGAGTTTTAATATGTTTGCAAAAGGCAAAGAGGTAATATTTCTTTTGTAATTACTAAATAGGATTTTTGAGGACATAGAAAATAATGGTTACAAAGCAGGCCTTTTACTTATTTTGCATTGTAAAAAGCCCTACTGGGAATTATCAGATTGTTGACTAATATAGTTGTATCTGACCCAAATAAATCAGGAAGGGTAATCCCGGTAACCTTTGTATCACCCTAAGATTTGCTCAGATGAAACTTTTCCAAGACAGATGCAAAATATCACAAGTTTAAAGCATTGATTCAATTAATAACCTTTTCTGCTGAATAAGAATAGTTGTATGCATGCTTTCTGTTTTTATTTTAAGTGTGCAGCTAAAAGACAACATAGACTTTCAGACAATAAGAATTTTTGTTACACATAGTTGTTAGAATAGATTTTCAAATTGCCAAAAATACAGCCTCAAAACCGTTTTAGAAAAGCTGAAAACATTTTTTATGTGGAAAATGTAATCCACTTCATCAGAGCTACCAGTTCATTGATTGTGTATATTTGGAATGTAATTGGGTCTTTATATGGGAAACAATGCTTTAATTCATTTCTTTATTCACACAGACAAGCTTTCTTCATTTCTAGTCAGTCATAGTAGCAGTACTTGGTATTAGTCATTAATGCACATTACATGTTGGAAAGCAATGTGACTAAAAGTTGCTTTCTGGTTACAG
Seq C2 exon
AAACTAATCTCTGAAGTGAAAATTCAAGTGGATAACCATATCCAGGATCTTAATTTCAATATCACTGCAATCTGTCCTGACGGAAGCAAAAAAACTGGCATGGAAGGATGTAAAAACATTGGATATAATCAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010875:ENSGALT00000037889:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(7.0=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(10.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]