GgaINT0090895 @ galGal4
Intron Retention
Gene
ENSGALG00000010875 | ITGB8
Description
integrin, beta 8 [Source:HGNC Symbol;Acc:HGNC:6163]
Coordinates
chr2:30143685-30146513:+
Coord C1 exon
chr2:30143685-30143774
Coord A exon
chr2:30143775-30146378
Coord C2 exon
chr2:30146379-30146513
Length
2604 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
AAGTTGCTTTCTGGTTACAGAAA
3' ss Score
5.03
Exon sequences
Seq C1 exon
GATCTGTTACCTCTGTTGCCTGGTACTGTTGCGAGACAGATAGAATCACAAGCAGCAAATCTCAATGATTTGGTGGTAGAAGCTTATCAG
Seq A exon
GTATGATCAGAATGACTGTGCTGGATGCTGTCTCTGTACAGGTTTTTTTTTTACTTTTCACACTCTAGAGCCTAAAATTGGAATTTCCAGGCCCCTATATAAAGTCCACGTTTCCTACTTTTCTGAATGTCCAGGTTGGTGGGTGACTGTATCCCTAAACAACTCTCAAATTCCCAGGCTGTTGGCTTTCCAAAATCAAGAGCTAATTTTATGCTAAGGATGCTCCTTAATACAGCGTTTGATTGTTTGCACCTTTTGCCATGTTACTTCCAAAGAAATTTCTGTTTCATTTGTATTTTTGGATCTCAGATCTTTGGTTACGTGCCAGACACTACTGCCTAGCTACCATAAAAATTCAGAGCAAAAGGACACTGCAATATTTATAGGGTTTTACCTCATAATTCTTAGAAAATTATGTAAATTATGTAAATTTCCATTTTACAAGGACGTAGTTTGACAACAGCAAGAATTGTGGAAAGCAGCATTTACATTGCACAGGGCAGCATAATGTCTCAGGGTTTTAATACATTGCAGTGAAGATAAGTTTTGATAGGGATTTGAGAGAGAACAAAGGAAATGGCTCTGTGTGCTTCTGCGTAGAGTTCTCAACTAGAAGTAGTACTATGGGAAAAAGCAGTTTCACAAATGATTGCTGAGGAATGTCAGCTTTTAAGGGAAGACTGTCATCTTGATAATGAGTGGAAGAGGGGATAAACAGCTTTAAAATGAAGCTATGTGGTATACATTTGATCCACTAGAGCAAAGGGAGCGCATAGAGCAGGAGTGAAATAAAAATAATAGGCTAGATAGCTGAATGCTTTCCAGGTGTGCAAGTTACATAAATATGCAAGGTTAAAAAGTTAGAAAATTAGTTATAAGCCTATATGCGAGGTATCTGTGTGCATCACATTAATTTTGATTATTTGGAGATGAAATTGCCCATTATGCTAGGTTAACCATCTAAATGAGGCTCTTCGGTTGCTTTCAGCAAATTAGCTCTAATGAGGAGCCAAGTCCCATGTCTGTTAGTAGTGGTAGAGTGGGCTTGTGTGCGTTTTCACAATGTCATATTGGAAACATTGTGCAGACGCCAAAGACATTCAAAAGCAGAGAAAGTATAATCAAATTGCAGATATATTCTCCCTGGTATTAGATTTTCTCTTCTAAATCAAGAAATCTCATTTTGAAAATAGATATTTGCAGGAAATAGTGAAATACTGCTTGCAAAAAATAATAATAATAATAATAATTTGCAGATCATGGTTCTTCTGAATGCCACTTTTACACTGTCCACCCTTAATTGTATCCAAGTTTTTACAGGATAATCCAGGGCAAGCATTCAAGAAGAGGAAATAAAAATTTACAAAATAATCCTTTCTGTTAAATAGAAGATTCTGTGGGACTTTCCTTCTCCAGCCACCCCCAGTTTGTTCTTGCTTTATTTTCTTTTTTTTTTTGGACAGTATCATCCTTCCTATCTTAAACTGCACTGGATTTGATACTTCTGAATACTTTTGTCATGGTTTTAGTTTCTTGTAATATACAAACAACACAGTGAACAGGGTTTGAATGTTTTGCCTTCATGATAGCATAAGTATTTACATAAGAAAATTTAGTGTTGATGTTTGATGGCAGTGGGCCTCTTGTACTCTTGTTCTAAGCAGGGAAGCCTTAGGCTCAGTTGTGGAAAACCTTGCCTGGAAATCCCTAAAAAAACAAAGATGAGTCACTACTTTTGAAAAAGTTACTTAGCTAAACATGTGTTCAGATTCATATAATTAAATTTTCATTTGCAACAGTAATGTCCCACAAAACTAATTTTAAAAATACTAAGATGCAAGGAATGTTACTGTTTGTAAGGAAATTTAGTAATCTCTTGGTGCAATAAATTTTTACAGAGTTTTAATATGTTTGCAAAAGGCAAAGAGGTAATATTTCTTTTGTAATTACTAAATAGGATTTTTGAGGACATAGAAAATAATGGTTACAAAGCAGGCCTTTTACTTATTTTGCATTGTAAAAAGCCCTACTGGGAATTATCAGATTGTTGACTAATATAGTTGTATCTGACCCAAATAAATCAGGAAGGGTAATCCCGGTAACCTTTGTATCACCCTAAGATTTGCTCAGATGAAACTTTTCCAAGACAGATGCAAAATATCACAAGTTTAAAGCATTGATTCAATTAATAACCTTTTCTGCTGAATAAGAATAGTTGTATGCATGCTTTCTGTTTTTATTTTAAGTGTGCAGCTAAAAGACAACATAGACTTTCAGACAATAAGAATTTTTGTTACACATAGTTGTTAGAATAGATTTTCAAATTGCCAAAAATACAGCCTCAAAACCGTTTTAGAAAAGCTGAAAACATTTTTTATGTGGAAAATGTAATCCACTTCATCAGAGCTACCAGTTCATTGATTGTGTATATTTGGAATGTAATTGGGTCTTTATATGGGAAACAATGCTTTAATTCATTTCTTTATTCACACAGACAAGCTTTCTTCATTTCTAGTCAGTCATAGTAGCAGTACTTGGTATTAGTCATTAATGCACATTACATGTTGGAAAGCAATGTGACTAAAAGTTGCTTTCTGGTTACAG
Seq C2 exon
AAACTAATCTCTGAAGTGAAAATTCAAGTGGATAACCATATCCAGGATCTTAATTTCAATATCACTGCAATCTGTCCTGACGGAAGCAAAAAAACTGGCATGGAAGGATGTAAAAACATTGGATATAATCAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010875:ENSGALT00000017677:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.011
Domain overlap (PFAM):
C1:
PF0036213=Integrin_beta=FE(7.3=100)
A:
NA
C2:
PF0036213=Integrin_beta=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]