DreINT0099734 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7472717-7473069:+
Coord C1 exon
chr6:7472717-7472854
Coord A exon
chr6:7472855-7472945
Coord C2 exon
chr6:7472946-7473069
Length
91 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
CTTCCCTCGTTGTGCCTCAGGAG
3' ss Score
7.87
Exon sequences
Seq C1 exon
GACCTAGAGGAGCAGCTGGATGAGGAGGAGGCTGCTCGACAGAAGCTGCAGTTGGAGAAAGTGACTGCTGAAGCCAAGATCAAAAAGATGGAGGAAGATATTCTGCTGTTGGAGGACCAGAACTCCAAATTCCTAAAG
Seq A exon
GTCAGTGTAGATGTTAACCAAAATGCAGTCCAGGGACTTTCTGATAAGCATGCTCGGAGATGTGCTAATTTCTTCCCTCGTTGTGCCTCAG
Seq C2 exon
GAGAAAAAGCTCCTGGAGGACCGTGTCGGTGAGATGACCTCTCAGCTGGCTGAGGAAGAAGAGAAGGCCAAGAACCTCGGCAAAGTCAAAAACAAGCAAGAGATGATGATGGTGGACTTGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=NA C2=0.794
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(18.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(17.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTAGAGGAGCAGCTGGATG
R:
AGAGGTCATCTCACCGACACG
Band lengths:
179-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]