MmuINT0103228 @ mm9
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68603607-68604242:+
Coord C1 exon
chr11:68603607-68603744
Coord A exon
chr11:68603745-68604118
Coord C2 exon
chr11:68604119-68604242
Length
374 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
TAGATTTTTTTTCTACTTAGGAA
3' ss Score
7.24
Exon sequences
Seq C1 exon
GACCTAGAAGAACAACTGGATGAGGAGGAGGGGGCCCGGCAAAAGCTGCAGCTGGAGAAGGTGACAGCAGAGGCTAAAATCAAGAAGATGGAAGAGGAGGTTCTGCTTCTCGAAGACCAGAATTCCAAATTTATCAAA
Seq A exon
GTAAGACCCTTTCCGTCTTACTTTATCAGGATGCAACAGAAAGCTGACACTCACTGAATGTGGCTCCATGCGAGGAAGAGAAAGTGCTGGAGAAAATTTCAGTTGTATTTACTTTCTCTGTAAAGGAGTTCTAAAGACAGGCTCTACTTAGCCAAATGTCCTACAACCTTTTCTAGTCTGTTCCATCTACGCCACTTGTAGTGCATCTGGTATTTGGGCTCTGAGCACAAGGCAGGCAGCAGGCAGGCACCAGGAGAGCACTGGCTACCCTGGGAACACCCCCTAGGCCCCGTTACCCACTGTTTCTCACATCAGAGAGAATCCCAAACCCAAACTCGCGTGTCTTTTCTGAAATAGATTTTTTTTCTACTTAG
Seq C2 exon
GAAAAGAAACTCATGGAAGACCGAATTGCTGAGTGTTCCTCTCAGCTGGCTGAAGAGGAAGAAAAGGCAAAAAACTTGGCCAAAATCAGGAATAAGCAAGAAGTGATGATCTCGGACTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-Myh10:NM_175260:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.524
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(19.1=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(17.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTAGAAGAACAACTGGATGAGG
R:
CTTCTAAGTCCGAGATCATCACT
Band lengths:
262-636
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: