RnoINT0096317 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55381763-55382425:+
Coord C1 exon
chr10:55381763-55381900
Coord A exon
chr10:55381901-55382301
Coord C2 exon
chr10:55382302-55382425
Length
401 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
AGAATTTTCTTTCTACTTAGGAA
3' ss Score
7.54
Exon sequences
Seq C1 exon
GATCTAGAAGAGCAACTGGATGAGGAGGAGGGGGCGCGGCAAAAGCTGCAGCTGGAGAAGGTGACCGCGGAGGCTAAAATCAAGAAGATGGAAGAGGAGGTTCTGCTTCTCGAGGACCAGAATTCCAAATTTATCAAA
Seq A exon
GTAAGACCCTTCCCATAGGGCGCCGCTGTCGAGACGCAGAAGAGCTGACACACTCACTGGTTGTGGCTCCTGGTGAGGGAGATAAAGTGCTGGAGAGAATTTCCCTTGCGTTTACTTTCTCTGTAAAGCTTCTGTCTAGAGCTCTGAAGACAGGCTGCATTTAGCCAAATGTCCTCACAACCTTTTCCAGTCTGCTCCATCTACGCCCCTTGTAGTGCATCTGGTATTCGGGCTCTGAGTGCAAGGCAGGTAGTAGGCAGCCACCAGATCGCCTAGCTGCTCTGGGAGGACACCACCCCGAGGCCCCAGTCACTCACTTTTTCTCACATCAGAGAGAATTCCAACCCAAGCTGCATGTAACTTGCATGTCTTCCCTGAATTAGAATTTTCTTTCTACTTAG
Seq C2 exon
GAAAAGAAACTCATGGAAGATCGAATTGCTGAGTGTTCCTCTCAGCTGGCTGAAGAGGAAGAAAAGGCAAAAAACTTAGCCAAAATCAGGAATAAGCAAGAAGTGATGATCTCGGATTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.391 A=NA C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCTAGAAGAGCAACTGGATGAGG
R:
CTTCTAAATCCGAGATCATCACTTCT
Band lengths:
262-663
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]