HsaINT0107473 @ hg38
Intron Retention
Gene
ENSG00000133026 | MYH10
Description
myosin heavy chain 10 [Source:HGNC Symbol;Acc:HGNC:7568]
Coordinates
chr17:8508554-8509949:-
Coord C1 exon
chr17:8509812-8509949
Coord A exon
chr17:8508678-8509811
Coord C2 exon
chr17:8508554-8508677
Length
1134 bp
Sequences
Splice sites
5' ss Seq
AAAGTAAGA
5' ss Score
6.91
3' ss Seq
AGTCAATTTTTCCTGTCCAGGAA
3' ss Score
7.22
Exon sequences
Seq C1 exon
GACCTGGAAGAACAGCTAGACGAGGAGGAAGGGGCTCGGCAAAAGCTGCAGCTGGAAAAGGTGACAGCAGAGGCCAAGATCAAGAAGATGGAAGAGGAGATTCTGCTTCTCGAGGACCAAAATTCCAAGTTCATCAAA
Seq A exon
GTAAGAGAGTGTTCCCACAAAAAGCTGATTTTAGTTACAGAAAATATTTATATAATATTATGTTGATACACTCATTGAAAGTGAACTCAAACAGAAATTTCTCAAGATTTTAGGTTCATTTACTGAATTTTCTCTGTAAGTCTCTACTTGTATAGATTTCTAAAGATACAGGCACCATTGAATTTTTTAAACCTTATCAAATATCCTGATAATCTTTTAGACTTGTAACATGTGCAGTTTGTGCATAATGGTCACTCAATGATGACTTGTCTCCATCTGTGCAAGCATTAATTCATCCACCATTGACTGTGGGACTCTGAATACCAGGCAGCTGGGCCAAGCTCCCGGGGTGGGCACCAAGACGTGTAAGCCTTTCTGCCCTTTTGGAGTACAGTCGTGTGTTGTTTAACGATGAGGACACATTCTGGGAAATGCATTGTGAAGTTATTTTATCCTCGTACAAACATCATAGAGTGTATGGACACAAACTAGATGGTAGAGCCTGCTATACACCTAGACCAGACGCTGGGCTGATTGCATCTAGGCCACACACTTGTACAGCATGTTACTGTCCTGAATACTGTAGGCAGTTGGAACACAGTGCTAATAAGTACTTGTGTATCTAAACATATCCACACAAAAGTCCAGTAAAAATATGATAGAAAAGGTACGGTAAAAATGATAGAAAAGATTTAAAATGGCACACCTCTATTGGGCACTCACCATGAACGGAGCTTGCAGGACTGGAAGCTGCTCTGGGTGAGTCAGTGAGTGAGCGCTGAGTGAATGTGAAGGCCTAGGACATTGCTGTACATGACTGCAGACTTTATCAACATGGCACACTGAGGCTGCAGTACATTTATTTTAAAAATAGAGTAATTGCACTGTGGTGTTATGACAGCTCTCGATGAAGTTTTCAGCTCCATGATCATCTTAGGAGACCACTGTCGTGTATCCGGTTCATCATTGTCCAAAACATCGTTCTGCAGCATGTGATTGTGTACAGTCTGCTGGGGGAGGCAGTGCCGATAGAACTTATTTTCTCTCGAGTCAAAGTTGACCTTTATGAGGAATACAGAACCCAAGTGGTCATTCTGAATGGCTTTTCTGAAGCAGTCAATTTTTCCTGTCCAG
Seq C2 exon
GAAAAGAAACTCATGGAAGATCGCATTGCTGAGTGTTCCTCTCAGCTGGCTGAAGAGGAAGAAAAGGCGAAAAACTTGGCCAAAATCAGGAATAAGCAAGAAGTGATGATCTCAGATTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026:ENST00000269243:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=NA C2=0.524
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGGAAGAACAGCTAGACGA
R:
ATCTGAGATCATCACTTCTTGCT
Band lengths:
254-1388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development