GgaINT0127254 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1705903-1706747:-
Coord C1 exon
chr18:1706610-1706747
Coord A exon
chr18:1706027-1706609
Coord C2 exon
chr18:1705903-1706026
Length
583 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTCACTTCTCTCCTAACTAGGAA
3' ss Score
10.24
Exon sequences
Seq C1 exon
GACCTGGAGGAGCAGCTGGATGAGGAGGAGGGAGCCAGACAGAAGCTGCAGCTTGAAAAAGTGACAGCTGAAGCTAAGATCAAGAAGATGGAAGAAGAGATCCTACTGTTGGAGGACCAAAATTCCAAATTTTTGAAG
Seq A exon
GTGAGGCTAGTATGCTTGGTAGAGATTCTGCTCAGAAGTAGTAGTAATGCCAAGTGATAGCAGCAGCTTCAGATATTTTGAGAGCTCTTTTACCTTTAGAGTTTGTGCCTGAAGACTTGTGGGATTTGAACAGGTTGAAGCTGAGACTTAGAGCTGCTTTGGAAGTGGCCTTTAGAAGGGTCACACTTGCCACGTGTTCTTGTGTGTTTCTTGAGTGTTCTCAATCAGAGAGTTTGATGCAGTGTCTGTCATAGCTACTGTTGTTCTTTGGTAGCTCTGCAGATACTACCATTGTTCTCTGTGAACTATACAGATGTTCTTAGACTTAAATGATAAGCAAAGAAACCAACCCTTCCAACCGTTAATCCCACGTCATGTTCTTGGGAAATAAAAATTCATGTTTCCATTCTATTCCAGGTTATTCCAACTGATCCTTGATATTGATTGATCTGTCACAAGCAATAATACTTGTATAGTATGCTATGTGAGATCTCTGTGGATTTTGTATGTTGAATTGTTTGTGCTGTTCAGAGACTCTGAGCCATAGGAGTTATTCCCCCCCACTCACTTCTCTCCTAACTAG
Seq C2 exon
GAAAAGAAGCTGATGGAGGATAGAATTGCTGAATGTACTTCTCAGCTGGCTGAAGAAGAAGAAAAGGCTAAAAATTTGGCGAAACTGAAGAACAAACAGGAAATGATGATCACTGATTTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.413 A=NA C2=0.690
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(29.0=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(26.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGGAGCAGCTGGATGAG
R:
AAATCAGTGATCATCATTTCCTGTT
Band lengths:
254-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]