DreINT0099742 @ danRer10
Intron Retention
Gene
ENSDARG00000000103 | myh10
Description
myosin, heavy chain 10, non-muscle [Source:ZFIN;Acc:ZDB-GENE-030616-162]
Coordinates
chr6:7481444-7482158:+
Coord C1 exon
chr6:7481444-7481596
Coord A exon
chr6:7481597-7481909
Coord C2 exon
chr6:7481910-7482158
Length
313 bp
Sequences
Splice sites
5' ss Seq
CAGGTACAC
5' ss Score
7.29
3' ss Seq
ATCCTCGTTTTTTTGGGTAGCTG
3' ss Score
6.04
Exon sequences
Seq C1 exon
GAGTTGCTTCAAGAGGAGACGCGTCAGAAGCTGAACCTGAGCAGCCGTATTCGTCAGCTGGAGGAGGAGAAAAACAATCTTTTGGAGCAGCAGGAGGAGGAAGAGGAGTCACGAAAGAACCTAGAGAAACAACTGGCAACACTACAAGCCCAG
Seq A exon
GTACACACAATCACTAACAGAAAAAAACTGATTAACCAGTATTGCCTCACATACAACCAATGCATCAATTTACATATTCTTTTAAATGGTCAAGGACTGCCTTTTCCAAACTTTTGTACTCCTCTCTAAGGCCTGCTCATGAGGTTATCAATACTTTTACATAAACAACTACATAATTTACAAGAAATAGGCCACATAGATTGAATAGAATTGGCTAATTGTAGACTCCAAAGTCAATGACCGCTGCTATGATTGGGTAACCATTTTAGGAACAAAAAAGGCAGTCGTTTTAAATCCTCGTTTTTTTGGGTAG
Seq C2 exon
CTGGTGGAGACCAAGAAGAAGCTGGAGGATGATGTTGGAGCCCTTGAGGGTCTGGAGGAGGTCAAGAGGAAGCTACAGAAGGACATGGAGGTGACCAGTCAGAAGCTGGAGGAAAAGGCCATTGCTTTTGACAAGCTGGAGAAAACCAAGAATAGGCTGCAGCAGGAGCTGGATGACCTCATGGTGGACCTAGACCATCAGAGACAGATCGTCTCAAACCTAGAGAAGAAACAGAAGAAGTTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000103:ENSDART00000151114:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=NA C2=0.133
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAAGAGGAGACGCGTCAGAA
R:
TGGTCTAGGTCCACCATGAGG
Band lengths:
342-655
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]