GgaINT0127261 @ galGal3
Intron Retention
Gene
ENSGALG00000001183 | Q789A6_CHICK
Description
NA
Coordinates
chr18:1697688-1698577:-
Coord C1 exon
chr18:1698425-1698577
Coord A exon
chr18:1697937-1698424
Coord C2 exon
chr18:1697688-1697936
Length
488 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTCTTTTGATACATTTCAGTTA
3' ss Score
7.63
Exon sequences
Seq C1 exon
GAACTACTTCAGGAAGAAACCCGCCAGAAACTCAACCTGAGCAGCAGAATTAGGCAGCTAGAAGAGGAGAAGAACAACCTGCAAGAGCAGCAGGAAGAGGAGGAGGAGGCCAGGAAGAACCTGGAGAAACAGATGCTAGCCTTGCAGGCACAG
Seq A exon
GTAGGTTGTTGCAAATGGCAGGACTTCTGTAAGGTCTGTAGATCTTGCAGAAATGTCATCTGAAGTTGCCAAGGCAGTCTGTCTCATATAGTGGAGCTGTGGATGCCCTACCCCTAGAAGTGTTCAGGCTGGGTGGAGCCTTCAGCAGCCTGGTCTGGGTGGAAGGTGCCCTGCTCATGGCAGAGAATTGGAACTGGGTAGTCTTCAAGGTCCCTTGCAACTCAAGACAGCCTGTGATCTAACTTGCAGAAATAGTTGGATTGGATTTCTGAATAGATCTTCCTGTGTTCTTCCTCCACTGCAGTTATGATTGGCACAACCAACTTTAATGGGCAGAGCGTGGCTCTGTTTAGTATGCTGCTAGCTCACCATTTTTGTGTTACTTTAACCAATGATAGCATCAGTTTGTGGTTTTGTAGTCTGGGCTTGATGCTTTTTTTCTTCTCCTGATGCACTAAACACTGTTATTTTCTTTTGATACATTTCAG
Seq C2 exon
TTAGCAGAGGCTAAGAAGAAGGTAGATGATGACCTGGGAACAATTGAAGGTTTGGAGGAAAATAAGAAGAAATTACTGAAGGATATGGAATCCTTAAGCCAACGCCTGGAAGAGAAGGCAATGGCTTATGACAAACTAGAAAAGACAAAGAATCGCCTGCAGCAAGAGCTGGATGACTTGATGGTAGATCTGGATCATCAGCGCCAGATTGTTTCTAACCTGGAGAAAAAGCAGAAGAAATTTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.804 A=NA C2=0.602
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAACCCGCCAGAAACT
R:
CTGGCGCTGATGATCCAGATC
Band lengths:
349-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]