RnoINT0096325 @ rn6
Intron Retention
Gene
ENSRNOG00000002886 | Myh10
Description
myosin heavy chain 10 [Source:RGD Symbol;Acc:71000]
Coordinates
chr10:55392752-55393522:+
Coord C1 exon
chr10:55392752-55392904
Coord A exon
chr10:55392905-55393273
Coord C2 exon
chr10:55393274-55393522
Length
369 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CTTCCTTACCCAAAACCTAGCTG
3' ss Score
3.82
Exon sequences
Seq C1 exon
GAGCTCCTTCAGGAGGAGACGCGGCAGAAACTGAACCTGAGCAGTCGGATCCGGCAGCTGGAGGAGGAGAAGAACAGCCTTCAGGAGCAGCAGGAGGAGGAAGAGGAGGCCAGGAAGAACTTGGAAAAGCAGGTGTTGGCCCTGCAGTCCCAG
Seq A exon
GTGTGTGTCCTTTTTGGGAACAGCGGTGCTCTAGATATGTGCAGGGACAGCGGTGGCCTAGCCACGTGGACTCAGCCTCTGCATTTTGGGACAGTTAATTAGGTTGAACTAAATTAAGCTCGGTACATGATTTTTTTTCTTTGACCCAGCCAAACACTAATGTCCTCTCCATAACTTGACAACCTTTACAGACAGAAGTATGGCTTCTGTGGGGCCTCAGTTCCAATTTACAGCTTAGCTAAGGGTTGTTTCAGGACTTGGGTTAGAAGCATACCGTGCTGGCTTATAATATTGAAAACAAGTGTTGATTCTTGAAATGCAAAAATCAGACAAGTTCTTATGACCCTTGCTTCCTTACCCAAAACCTAG
Seq C2 exon
CTGGCTGACACCAAGAAGAAAGTGGACGATGACCTGGGGACAATTGAGGGTTTGGAAGAAGCCAAGAAGAAACTGCTTAAGGACGTGGAGGCACTGAGTCAGCGACTGGAGGAAAAGGTCCTAGCATATGACAAGCTGGAGAAGACCAAGAACCGGCTGCAACAGGAGCTGGATGACCTGACGGTGGACCTGGACCACCAGCGCCAGATCGTCTCCAACTTGGAGAAGAAACAGAAGAAGTTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002886:ENSRNOT00000065895:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGAACCTGAGCAGTCGGAT
R:
CCAAGTTGGAGACGATCTGGC
Band lengths:
347-716
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]