HsaINT0107481 @ hg19
Intron Retention
Gene
ENSG00000133026 | MYH10
Description
myosin, heavy chain 10, non-muscle [Source:HGNC Symbol;Acc:7568]
Coordinates
chr17:8396094-8397203:-
Coord C1 exon
chr17:8397051-8397203
Coord A exon
chr17:8396343-8397050
Coord C2 exon
chr17:8396094-8396342
Length
708 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
3' ss Seq
TGTCCGTACACAAAACCTAGTTG
3' ss Score
2.17
Exon sequences
Seq C1 exon
GAGCTTCTTCAGGAGGAGACACGCCAGAAACTAAACCTGAGCAGTCGGATCCGGCAGCTGGAAGAGGAGAAGAACAGTCTTCAGGAGCAGCAGGAGGAGGAGGAGGAGGCCAGGAAGAACCTGGAGAAGCAAGTGCTGGCCCTGCAGTCCCAG
Seq A exon
GTGTGCGTCCTCTTTAGGAGGCCGCGGTGGCCTCGATGTGTGCCTTCAGCAGATCCTGGCCCTGCTGTGCTGGGCTGTCTCAGCTCCATTTGGGACAGTTAATTAGGTCGTACTAAATTAAGCCCATTAAATGGTTTTTCTTGACCCAGCCACATGCTGGTTATAATGCTGGAAGCCCTTAAAATAAGGACCTAGGACTGTGTCAACGATGTAAGATTTCAATCCAGTCATCATTTTATGGACTATTAGCTAAGAAATTAAGTGACAGTCTAAGACTCATTTGTTTTAAAATCACAGTATTGATTTTTCTTCTCTCAAAATATTAAAAACAAAAGGTTTTTTTTTTCTTCAAAGGCAAAAACCAATTGAGTTCTTTTTTTTTTTTCCTTGAGATAGAGTCTCACTTTGTCGCCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTCACTGCAGCCTCCACCTCCTGGGCTCAAGTGATCCTCCCACCTGAGCCTCCCCAGTAGCCGAGACTACAGACAGGCGATTTTTGTATTTTTAGTAGAGATGAGGTTTCACTATGTTGGCCTGGCTGGTCTCAAACTCCTGACCTCAAGTGATCCTGCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCACCATGCCTGGCCCCAATTGAGTACATTAATACTGAGCTTTCTGTTTGTCCGTACACAAAACCTAG
Seq C2 exon
TTGGCTGATACCAAGAAGAAAGTAGATGACGACCTGGGAACAATTGAAAGTCTGGAAGAAGCCAAGAAGAAGCTTCTGAAGGACGCGGAGGCCCTGAGCCAGCGCCTGGAGGAGAAGGCACTGGCGTATGACAAACTGGAGAAGACCAAGAACCGCCTGCAGCAGGAGCTGGACGACCTCACGGTGGACCTGGACCACCAGCGCCAGGTCGCCTCCAACTTGGAGAAGAAGCAGAAGAAGTTTGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000133026-MYH10:NM_005964:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=0.386
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(9.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCAGAAACTAAACCTGAGCA
R:
TCCAAGTTGGAGGCGACCTG
Band lengths:
356-1064
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)