GgaINT0127261 @ galGal4
Intron Retention
Gene
ENSGALG00000001183 | MYH10
Description
myosin-10 [Source:RefSeq peptide;Acc:NP_990805]
Coordinates
chr18:1710661-1711550:-
Coord C1 exon
chr18:1711398-1711550
Coord A exon
chr18:1710910-1711397
Coord C2 exon
chr18:1710661-1710909
Length
488 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTTCTTTTGATACATTTCAGTTA
3' ss Score
7.63
Exon sequences
Seq C1 exon
GAACTACTTCAGGAAGAAACCCGCCAGAAACTCAACCTGAGCAGCAGAATTAGGCAGCTAGAAGAGGAGAAGAACAACCTGCAAGAGCAGCAGGAAGAGGAGGAGGAGGCCAGGAAGAACCTGGAGAAACAGATGCTAGCCTTGCAGGCACAG
Seq A exon
GTAGGTTGTTGCAAATGGCAGGACTTCTGTAAGGTCTGTAGATCTTGCAGAAATGTCATCTGAAGTTGCCAAGGCAGTCTGTCTCATATAGTGGAGCTGTGGATGCCCTACCCCTAGAAGTGTTCAGGCTGGGTGGAGCCTTCAGCAGCCTGGTCTGGGTGGAAGGTGCCCTGCTCATGGCAGAGAATTGGAACTGGGTAGTCTTCAAGGTCCCTTGCAACTCAAGACAGCCTGTGATCTAACTTGCAGAAATAGTTGGATTGGATTTCTGAATAGATCTTCCTGTGTTCTTCCTCCACTGCAGTTATGATTGGCACAACCAACTTTAATGGGCAGAGCGTGGCTCTGTTTAGTATGCTGCTAGCTCACCATTTTTGTGTTACTTTAACCAATGATAGCATCAGTTTGTGGTTTTGTAGTCTGGGCTTGATGCTTTTTTTCTTCTCCTGATGCACTAAACACTGTTATTTTCTTTTGATACATTTCAG
Seq C2 exon
TTAGCAGAGGCTAAGAAGAAGGTAGATGATGACCTGGGAACAATTGAAGGTTTGGAGGAAAATAAGAAGAAATTACTGAAGGATATGGAATCCTTAAGCCAACGCCTGGAAGAGAAGGCAATGGCTTATGACAAACTAGAAAAGACAAAGAATCGCCTGCAGCAAGAGCTGGATGACTTGATGGTAGATCTGGATCATCAGCGCCAGATTGTTTCTAACCTGGAGAAAAAGCAGAAGAAATTTGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001183:ENSGALT00000023397:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.804 A=NA C2=0.602
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(14.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGAAACCCGCCAGAAACT
R:
CTGGCGCTGATGATCCAGATC
Band lengths:
349-837
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]