MmuINT0103236 @ mm9
Intron Retention
Gene
ENSMUSG00000020900 | Myh10
Description
myosin, heavy polypeptide 10, non-muscle [Source:MGI Symbol;Acc:MGI:1930780]
Coordinates
chr11:68615079-68615858:+
Coord C1 exon
chr11:68615079-68615231
Coord A exon
chr11:68615232-68615609
Coord C2 exon
chr11:68615610-68615858
Length
378 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
3' ss Seq
CCTCCTTACCCCAAACCCAGCTG
3' ss Score
4.32
Exon sequences
Seq C1 exon
GAGCTCCTTCAGGAAGAGACACGGCAGAAACTGAACCTGAGCAGTCGGATCCGGCAGCTGGAGGAGGAGAAGAACAGCCTTCAGGAGCAGCAGGAGGAGGAGGAGGAGGCCAGGAAGAACCTGGAGAAGCAGGTGTTGGCTCTGCAGTCCCAG
Seq A exon
GTGTGTGTCATCTGGGGAGCAGCGGTGCCCTAGATGTATGCAGGGACAGTGCAGCCTGGCCACAGGGACTCTGTCTCTGCATGTGGGACAGTTAATTGGGTTGAACTAAATTAAGCTCGTTACATGGTTTTTCTTCCTTTGACCCAGTCAAACACTGATGTCCTCTTTATAACTTCACCACCTTACAGACAGAGCGTGGCTTCATGGGATGCCAATACAGCTGCCATTTTACAGCTTAGCTAAGGGTTCCTTCCACTCCAGGGCTTGTGTTAAAATCATCCCATGCTGGTTTATAATATTGGAAACAAGTGTTTATTCTTGAAATGCAAAAGTCAGACGAGTTGTTATCTGACCCTTGCCTCCTTACCCCAAACCCAG
Seq C2 exon
CTGGCTGACACCAAGAAGAAAGTGGACGATGACCTGGGGACAATCGAGAGTTTGGAGGAAGCCAAAAAGAAACTGCTCAAGGATGTGGAGGCGCTGAGCCAGCGGCTGGAGGAGAAGGTCCTGGCGTATGACAAGCTGGAGAAGACCAAGAACCGGCTGCAACAAGAACTGGATGACCTGACGGTGGACCTGGACCACCAGCGCCAGATCGTCTCCAACTTGGAGAAGAAACAGAAGAAGTTCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020900-Myh10:NM_175260:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.588 A=NA C2=0.108
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(5.8=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(15.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACGGCAGAAACTGAACCTG
R:
CCAAGTTGGAGACGATCTGGC
Band lengths:
358-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: