DreINT0100339 @ danRer10
Intron Retention
Gene
ENSDARG00000074143 | myo10l3
Description
myosin X-like 3 [Source:ZFIN;Acc:ZDB-GENE-070912-237]
Coordinates
chr9:12696171-12697160:-
Coord C1 exon
chr9:12697040-12697160
Coord A exon
chr9:12696630-12697039
Coord C2 exon
chr9:12696171-12696629
Length
410 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
GTTCTCCTTAATCTTTCCAGGCT
3' ss Score
7.47
Exon sequences
Seq C1 exon
GCTGACAGGAAGTGAGCTGGAGGAAGACGGCCCATGGAAGTTGTACTTCAAACTGTATTGTTTCTTGGATGTGGAGAGCATGCCCAAGGAAGGAGTGGAGTTTGTCTTCATGTTTGAGCAG
Seq A exon
GTCAGTAATTTAATTCAGTTAGTTATACTTGGAGAATCTAGACGTTGTGTTTCATATTCATCCCTTTATTTGAAATACAATTAAAAAGCTTTAGTTAGCTATTACAAGACTGGATTCTGAGTAAAGAATAATTTTCAATGTTTTAACAGACTTTTGTAATACTATTTGTTGCACTCTTGCTTAACTTGTCTGAGTTCCATATGGATTTGCATTAAACTCATTTGTATACTGACAGTCTTTAGAAGCTTAGCTAAACCATGCTAACAATGCTCACATTTCAACTTTGTACTATTTACTTCACCTTTGTACTCCAAATTAGACCATACAGATGTATAATCCGTGGAAAAACGCATATCTTTCAGATTTTAGAGAAAGTAAAGTGTAATTCTTGTTCTCCTTAATCTTTCCAG
Seq C2 exon
GCTCATGAAAGTTTAATAAGCGGTCATTTCCCTGCGCATGAGGACACCCTCCAGCACCTTGCTGCTTTACGTCTGCAGTACCTGTATGGGGATGTGTCACGGGTCAACTGGAGCTTGGACAGCATCTACCCCACTGGTTGTCTGCGCAGCCGCATACTTCAATTCACCAAAGTAGGAGGTGCAGCTGGATCGGGACAAACCCTAGAAAGGAGGAGGACGAGCTTCCTGGATGGCACTCTGAGGCGGGGGCTGAAGACCGGCACCATGAAGAAGCAGCGCAGTATGCAGGAGGAACAAATGCTGGAAATGTGGATCAAGGAAGAGACTTCAGCCACCAGAGCCAGTATTATGGAAAAATGGAGTCGGCTGCATGGCCTGGATCAGCATCAAGCCATGGTCAAATACATGAACATCATCAAAGAGTGGCCTGGGTATGGGTCAACGCTGTTTGATGTAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074143:ENSDART00000138360:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF0078818=RA=PD(0.1=0.0),PF0037313=FERM_M=PU(10.1=41.5)
A:
NA
C2:
PF0037313=FERM_M=PD(88.7=97.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTGGAGAGCATGCCCAAG
R:
CCAGCATTTGTTCCTCCTGCA
Band lengths:
358-768
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]