DreINT0100855 @ danRer10
Intron Retention
Gene
ENSDARG00000061635 | myo5aa
Description
myosin VAa [Source:ZFIN;Acc:ZDB-GENE-041027-2]
Coordinates
chr18:38988302-38990883:+
Coord C1 exon
chr18:38988302-38988408
Coord A exon
chr18:38988409-38990617
Coord C2 exon
chr18:38990618-38990883
Length
2209 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TTTACTTTTTTCCCCTCCAGCCA
3' ss Score
9.98
Exon sequences
Seq C1 exon
GTATAAATGAGTCCTATCAGATGGGCTTGTTTCAGATATTGGCTTCCATTTTGCACCTTGGAAATGTAGACGTGAAGGATAGAGACTCGGACAGCAGTATTATTCCA
Seq A exon
GTGAGTCTGATGTTGACTTTAAAGTTCAAACAGAAACCAGATAACCGAACAAAAGTTTTGAAGTGCAGCACTGTTGAATGCATTTTATGACACTTTTAAGACACAGTCAAACATTAAGCGAGCAAAGTTAAAAGGCATTAATAAAGTGCTTATCACAGCGTACATATTATTATTTTTTTTTTTTTATACAGTTGAAGTCAGAATTATTAACCCCCTGAATTATTAGCCCCCGTTTATTTTTTCCCCCGATTTCTGTTTAACGGAGAGAAGATGTTTTCAACACCTTTCTAAACACAATAACTCATTTCTAATCACAGATTTCTTTTATCCTTGCCATGATGTTTTTCAAGACACCTTTATACAGCTTAAAGTGACATTTAAAGGCTTAACTAGGTTAATTGGGTTAACTTGGCAGGTTAGGGTAATTAGGCAAGTCATTGTATAACGATGGTTTGTTCTGTAGACTGTCAAAAGAAATGTATAGCTTAAAGGGCTAAAAATTTTGTCCCTAAAAAAGTATAATCCAAAGGGGGGTTATAAATCTTACTTCAACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATATATATATATATATATATATATATACATATATTTATATATAGCCAATCCCAAAGTTATTCATACCCCTAGCAAATTCTGATTATTTTTTTGTTCACATGTAAATATATATTTTTTTCCACAATGATGCTTGTTGTACATCATCTTATTATCATTTAGGAAACGCCTTTGTCATTTCCAGCCCCCCAAAAAACTTACTAGTTGACTAAAACTAACTCTAAGTCAGAGTTTACCGGGATATAAATAATTTCAGGCTTAACTGTATACATTACCTGACAAAAATTTTATGGTCAATCCCAACTTCTACAGTAGTTGATCGTTTGGAAAAAGGTAGATTTTTCTGATTAAATAATCTGTTGAACTCCTAATCCCAATTATCACAAATACTGCAGAAGACCTATTGGAACGCACATGGACCCAAAATCTCACTGAAATCAGTCAAGTTTGGTGAAGTAACAGTCTGAGCTATTAAGACATTTTTGCTGCCCATTACATTACAAACCACAAGAGAGGGCAAATTCTTCAGCAGGATAGCGCTCCTTCTCATACTTCAGCCTCCACATCAAAGGTCTTTAAAGCAAAGATCAAGGTGTTCCAGGATTGGCCAGCCCAGTCACCAGACATGAACATTATTGAGCATGTCTGGGGTGATGGGGGAGGCATTGAAGATGAATCCAAAGAATCTTGATGAACTCTGGGAGTCCTGCAAGAACGCTTTCTGTGCCATTCAAGATGACTTTATTAAAAAGTTATTTGAGTCATTGCAGAGATGTATGGATGCAGTCCTCCAAGCTCATAGGAGTCATAAACAATATTTGTTATTTTTCCACTGCACCATGACTTTATATTCTATACTGTACATTATTTCTGTCAAAAGTCAGACCTTACCATCTAATTAAATAATTAAAAATCAAGACATGATTATATTTTATTTTGGTAAAATCAGCTTTATCTAAAGGCATTTACCTTTCAGATAAGGCATTTTTGACACCAAATGATCAACCAGAAGTCAAGTTATTATTTGTTGTTCCTAAAACCTGGATTGGTGACAAGAGTTTTATCATGTAGTGTATATCTTCAGAAGAAATAAATCTATATTGGATGGAATTACCCTAATTATTAATTCTGATTTGTTATTTTGGCTATCTGTTATTTTCTGGGAAATAAAATATGTAGATGTCTAGATGACAGTATTTTATTTGAAATTTGGAAGAAATGTTATCAGATCTTGATGTAATAAAACAAATATCAACATTTTACTTAGACTCATACCAAATAAATCCATTATATTTAGAGACAATTGATGATTTTCAAGTGGTTTAAAGCTGTAATTCCAACTTTACACGGTATATGATGTTGATAATGTGGAACAATATTTAAGAGATTTGTCAGTTTTTTCAAATGTGAAATTATTTAAAGTTTTATTGCATTTTTATACCTTCAGGATATTTTTTACCCACATGCATCGCACCAAATCTCACAGTAACTATGTATTGTATTGTGTAATAACTATGTAATTCTTTTACTTTTTTCCCCTCCAG
Seq C2 exon
CCAAACAACGGTCACCTGAGTGTGTTTTGTGAGTTGATGGGAGTAACATATCAAGACATGTCTCATTGGCTCTGTCATAAGAAGTTGAAGACTGCGACTGAGACATACATAAAGCCCATACCCAAACTACAGGCTATAAACGCCCGCGACGCTCTCGCCAAACATATCTACGCCAAACTCTTCAACTGGATTGTAGACCACGTGAACAAAGCTCTGCATTCAACGGTCAAGCAACACTCTTTCATCGGAGTCTTGGACATTTACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061635:ENSDART00000133618:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006316=Myosin_head=FE(5.1=100)
A:
NA
C2:
PF0006316=Myosin_head=FE(12.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]