DreINT0108896 @ danRer10
Intron Retention
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28658687-28659828:-
Coord C1 exon
chr12:28659706-28659828
Coord A exon
chr12:28659623-28659705
Coord C2 exon
chr12:28658687-28659622
Length
83 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TCACCCTCCTCATTTTACAGGAA
3' ss Score
11.99
Exon sequences
Seq C1 exon
GTTACTCGAAGAGGGGAAAGTAGAGGAGACTGATAAAAAGAAGGATGAGGTGGAGGAAAAGCAAAGAGAAAGGAGGAAAATAATGGCTAAGAGAGGAGAGGAGCACATCCCTCGCTTCTTCAG
Seq A exon
GTGAGTTAATAACAACATCTCTAACTGATGAATTGAGTGCTATAAGAGCTGAAAGGCTAAAATTCACCCTCCTCATTTTACAG
Seq C2 exon
GAAATCTTTGGATGCTGCTGGAAGGGAAGTTTGGCTGACTAATGGGACATACTGGAAGATTAGAGAGAATCCTGGATTTGCCAATGTTAATAATCTGGAGTTATGGTGAAGGTTGATCACAGCAACATTGTGGACACTAGATCCCTGTGATAAGTCAAGTTTGCACATAAAGACTATACAAACATTGGGAACTTTGGAAGCAAAGATGAATTGCCAAGGGTTTTTTTTGTATTGAACCAAATCCATTGTGCGAGGATGATGCTTTTATCGAAAACGGCAACGGGGAGGGATGCATTTTGAACATTTCTATTTATTTCGTGATCGAGGATACAGAAACTTGGTGATGGTTTGACCATGATTTTCAATTTGGATAAAATAGAAGGCAAAAGGTAATGGAGGATGTTGTGGAGATATTTTTGAACATTTCTATGGATGATCTTACATTACATTTACAGTTGATTGAAGTACTTATGCACCAATGGATACTGGATAATTCGGGTATATATAATATTCAGAGTTCTCCTTAACTACTTTCTTCTTCCTGTTAACATACCCGTTTATAAAAGGACTGCTATTTCTCGTGCAATGCCGTGGCTCAACCTGAGCAGGATTTAGCAGTAAATGGATTAACTCTAATTTTGGGCCCTCATCGACTTGTACTGAAGGAGGCTGCTGAAATGTGTCCTCGGTCACTCTTAGATTCTGCATCCTCTCCTTATTTTTTTTTAAATGAAACATATTTTGAGTTTAGATAATATTTATTGGCGTTTAAGCTCAGTTTTTGTCCTATATGAAATGTGATATCATAAATGACCATTTTGTGTAGGTTTGCTTGAAAACAATCAGTGTAAATGTGTAATTAATAAACTTTCCAGTCATGACTTGCATGGCTGATTAAAACAAATAAAATGTACAACATTAAAGACTACAAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981:ENSDART00000020667:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.690 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.6=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACATCCCTCGCTTCTTC
R:
TCACAGGGATCTAGTGTCCACA
Band lengths:
173-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]