HsaINT0118713 @ hg19
Intron Retention
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:16387]
Coordinates
chr17:45884733-45886026:-
Coord C1 exon
chr17:45885904-45886026
Coord A exon
chr17:45885766-45885903
Coord C2 exon
chr17:45884733-45885765
Length
138 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
CCACCGCCTTCTCCCACCAGGCG
3' ss Score
10.81
Exon sequences
Seq C1 exon
GTACCTGGAGGAGGGGAACATACAGGCCGCTGAGGCCCAGAAGAGAAGGATCGAGCAGCTGCAGCGAGACAGGCGCAAAGTCATGGAGGAAAACAACATCGTACACCAGGCTCGCTTCTTCAG
Seq A exon
GTGCCTCGGCCTCGCCCTCCGCCCTGGGTCTCCCCATGAGCCCTGCTTGGAGCAGGGCAGGTGTGGGAGGCAGCACCTTAGGACCCTAGCCTGCCTTCTAGATGTTCACCCCTCACTGCCACCGCCTTCTCCCACCAG
Seq C2 exon
GCGGCAGACGGATAGCAGCGGGAAAGAGTGGTGGGTGACCAACAATACCTACTGGAGGCTGCGGGCCGAGCCAGGCTATGGGAACATGGATGGGGCCGTGCTCTGGTAGCCCTGGCCCCGGGGGCAGGAGGCTCTGGTTCCTCACTCCTCCTGCCTCCACCCCCTACCATGGACACATGGGTGAGGCCGGGCTCCCCGCCTCACTGCCCTTGAGACCAAAGGGGCAGCCCTGGCCCTCCCTCCCCTCTGCTGGCCAGAGGGTCTGCATCTCAGCCCACCCCCAACCCCACCGTTTGGGGTGAGAAGCAGAATCTGTGCTTCCCCAGTCTCCTTGCCCCAGACAACCAGCATGTAAGACCCTTCCCGCTTCACCATTCCGATTCCTGTCCCCTTTGGGGTACTTGGGGGAGACTCTGGCTCCCAGGATCTGTTCCCTATTTCAGTGCCTTCCTAGGACACAGGGGACTCCTTGACGCTCCCCAGGCTTTCTGTGCCCAGGCCTCTGTCCCCAGCGGTGAGGTTGCAGTGAGTGAAGGAGAGGAGGTGATCTGTTCTCCCTCCCCTTCTGCCCATCTCCAGCATCTTCTTCCCCTTCCCTGGCCCTGCAGGGCCTTCTCCAGCTCCCTTTGGTTAGTCCCTGGCCATCCCTCCTGTCCTGGATCCCTTCTCCCTAACTGCAAAATGCCTGCAGCTTCCAGCTCCTTCGTCCCTGATCCTCAAGCGGTTCCCTCCCGTCTCAGCTCAGCGGATCCCCCAGAGTGGAGGAGGCCTCTCCATGAGGAGGGGAGCAGCCCAAGGCACCTGTCCTCTGACCCACCGGCAGCGAGTGCGCAGGTGTGAGTGTAAGTTCATGTAGGAGAGTGTATGCGTGTGCGCCTGTGCCCTGCTTGCAGGCAAGCAGGGCTCCCTCATGTAGCCCCGCCTTCCCCCTGCTGGGGGTCCACCACATCGCTGCTCTTTCTCACAGTCTGCCTCTGATGAGGGCGAATTGCTATGACATTCCAAGCTCCAATAAAGACTGTCCCAGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-OSBPL7:NM_145798:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACACCAGGCTCGCTTCTTC
R:
CCTTTGGTCTCAAGGGCAGTG
Band lengths:
245-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)