RnoINT0105841 @ rn6
Intron Retention
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:85002726-85003938:+
Coord C1 exon
chr10:85002726-85002848
Coord A exon
chr10:85002849-85002999
Coord C2 exon
chr10:85003000-85003938
Length
151 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
TAATGATGCTTTTTCCCCAGGCG
3' ss Score
7.58
Exon sequences
Seq C1 exon
ATACCTGGAGGAGGGGAACATACAGGCCGCTGAGGCCCAGAAGAGAAGGATAGAGCAGCTACAGCGCGATCGGAGAAGAGTAATGGAGGAAAACAACATAGTCCACCAGGCGCGCTTCTTCAG
Seq A exon
GTGCTTCAGCCCTACCTGCCCTGCATCCCTCCGCAGCCCGGCTCCTCATTGCCCCTTATTCTTTGAGTAGGGTGACGGTGGGAGGCAGTACCAGGGACCTAACCTGCACTGGACTGTCCCCTACCCACACCTAATGATGCTTTTTCCCCAG
Seq C2 exon
GCGACAGACAGACAGCAGCGGCAAGGAGTGGTGGGTGACCAACCATACATACTGGAGGCTACGCGCTGAGCCAGGCTATGGGAACCTGGATGGGGCTGTGCTCTGGTAACCCTGGCCTCGGGGCAGGAGACTCTAGCTCATCACTCCTGCCCCAGCTCCTGCTATGGACATGTGGGTGAGGTCGGGCTCCCTCTCGCTGCCCTTGAGTGCCAAGGGGCAGCCTAGGCTCCAGCCCTTTCCCCCTCTGCTGGCCAGAGGGGTTGTATCTCAGCACAGTCCCGTTCCACCGCTGGGATGGAAGTGGAGTCTGTGTTCCCCCCACCCCCCGTCTTGTTACCCCAAGTCTGGCGTGTCAGACCCTTCTCGCTCAGCCACCCTCCTCCTCTGGGAGCGTTTGGGAGGGATGCCAGTTTCCCCAGATCCGTCCCCCATTTCAGTGCCTTCCTTGGACACAGAGGGCCCCTTGATGCTACCCAGACTTCCCGTGCCCAGGGTGTTGCCTGTGTTGGCTGTGTTGGAGTGAGTGAAGGACAGGAGATGCCTCCTTTCCCATCTGTCCTCCCTTCAGCATCTTCCCTGTGCCCTGACCCATCCCTTGTCCTGCATCCCCTTCTCCCAAACTGCAAAGCACCTTTGGCTTCCGGCTCCTCCATCCCTGCTCCACCAGTGGTCCCCTCAGGCTCAGCTTAGCAAAAGTCCCAAGAGGTGGAGAGCAGTCTGGGGTGCCTGGTCTCAGATCCACCCAGGAGGGAGTGAGCCAGTGTGAGCGTACGTTTGTGTAGGAGTGTGTGTGTGTCCTGCTCGCCGGCGAGCAGGCTTCCTCATGTAGCCAGGACACCTCCGCTGTTGCTGGTGTCTGTTACAGTTGCTGCTCAATTTCCCAGTTTGCCTGAGTCAGGTGAATTGCTATGACATTCCAAGCTCCAATAAAGACTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473:ENSRNOT00000067665:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.405 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAGGCCCAGAAGAGAAGGA
R:
GGGCAGGAGTGATGAGCTAGA
Band lengths:
246-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]