MmuINT0113745 @ mm9
Intron Retention
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:96928979-96930218:+
Coord C1 exon
chr11:96928979-96929101
Coord A exon
chr11:96929102-96929255
Coord C2 exon
chr11:96929256-96930218
Length
154 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCTT
5' ss Score
4.83
3' ss Seq
TGATGCTTTCTGCCCCCCAGGCG
3' ss Score
9.75
Exon sequences
Seq C1 exon
GTACCTGGAGGAGGGGAACATACAGGCTGCTGAGGCCCAGAAGAGAAGGATAGAGCAGCTCCAGCGAGACCGGAGAAGGGTGATGGAAGAAAATAACATAGTCCACCAGGCGCGCTTCTTCAG
Seq A exon
GTGCTTCGGCCCTACAGCTCTGGATCCCTCTGCTGCCCGGCTCCTCATTGCTCCCTTATGCTTTGAGTAGGGTGATCATGGGAGGCAGTGCCAGGGACCTAGCCTGCACTCAGCTATTCCCTACCCACACCTAATGATGCTTTCTGCCCCCCAG
Seq C2 exon
GCGACAGACAGACAGCAGCGGCAAGGAGTGGTGGGTGACCAACCATACTTACTGGAGGCTTCGAGCTGAGCCAGGCTATGGGAACCTGGATGGGGCCGTGCTCTGGTAACCCTGGCCTTGGGGCAGGAGACTCAAGGTCCTCGCTCCTGCTCCAACTCCTGTTATGGACACATGGGTGAGGTCAGGCTCCCTCGCCGTGCCCTTGAGTGCAAAGGGGCAGCCTAGGCTCTAGCCCTTTCCTCCTCTGCTGGCCAGAGGGGCTATATCTCAGCACACTCCCGTCCCAACGCTGGGGTGAAAGTGGACTCGGAACGGGAATCCGTGCTTTCCCCGTCTTGTGACCCCAAATCTGGCATGTCAGACCCTTCTCGCTCAGCCATCTTCCTCATCTGGGAGTGTTTGGGAGAGATGCCAGGTTCCCCAGACCTGCTCCCCATTTCAGTGCCTTCCTTGGACACAGAGGGCCCCTTGATGCTCCCCAGACTTCCCGTGCCCGGGGCGCTGGCTGTGCTGTAAGGTTGGAGTGAGTGAAGGAGAGGAGATGCCCCCTTCCCGTCTGTTTGTCCTCTCTTCCAGCATCTTCCCTGTGCCCTGACCCATCCCCTTGTCCTGCATCCCCTTCTCCCAAACGGCAAAGCACCCGCAGCTTCAGCTCCTCCGTTCCCTGCTCCACCAGTGGTCCCTTCAGGCTCAGCTTAGCAGAAGTCCCAAGAGATGGGGAGCAGTCTGGGGTGCCTGGCCTCAGATTCACCCAGGAGGGAGTGAGCCAGTATGAGTGTAAGTTTGTGTAGGAGTGTGAGTGTGTGTGTCCTGCTTGCCGGCGAGCGGGATTCCTAATGTAGCCAGGACACCTCCGCTGCTGCTGGTGTCTGTCACTCTGTTGCTGCTCATTTTCTCAGTTTGCCTGAGTCAGGTGAATTGCTCTTACATTCCAAGCTCCAATAAAGACTGTCCTAGACTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-Osbpl7:NM_001081434:22
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAGGGGAACATACAGGCT
R:
GAGGACCTTGAGTCTCCTGCC
Band lengths:
258-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: