HsaINT0118713 @ hg38
Intron Retention
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr17:47807372-47808660:-
Coord C1 exon
chr17:47808538-47808660
Coord A exon
chr17:47808400-47808537
Coord C2 exon
chr17:47807372-47808399
Length
138 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCCT
5' ss Score
5.4
3' ss Seq
CCACCGCCTTCTCCCACCAGGCG
3' ss Score
10.81
Exon sequences
Seq C1 exon
GTACCTGGAGGAGGGGAACATACAGGCCGCTGAGGCCCAGAAGAGAAGGATCGAGCAGCTGCAGCGAGACAGGCGCAAAGTCATGGAGGAAAACAACATCGTACACCAGGCTCGCTTCTTCAG
Seq A exon
GTGCCTCGGCCTCGCCCTCCGCCCTGGGTCTCCCCATGAGCCCTGCTTGGAGCAGGGCAGGTGTGGGAGGCAGCACCTTAGGACCCTAGCCTGCCTTCTAGATGTTCACCCCTCACTGCCACCGCCTTCTCCCACCAG
Seq C2 exon
GCGGCAGACGGATAGCAGCGGGAAAGAGTGGTGGGTGACCAACAATACCTACTGGAGGCTGCGGGCCGAGCCAGGCTATGGGAACATGGATGGGGCCGTGCTCTGGTAGCCCTGGCCCCGGGGGCAGGAGGCTCTGGTTCCTCACTCCTCCTGCCTCCACCCCCTACCATGGACACATGGGTGAGGCCGGGCTCCCCGCCTCACTGCCCTTGAGACCAAAGGGGCAGCCCTGGCCCTCCCTCCCCTCTGCTGGCCAGAGGGTCTGCATCTCAGCCCACCCCCAACCCCACCGTTTGGGGTGAGAAGCAGAATCTGTGCTTCCCCAGTCTCCTTGCCCCAGACAACCAGCATGTAAGACCCTTCCCGCTTCACCATTCCGATTCCTGTCCCCTTTGGGGTACTTGGGGGAGACTCTGGCTCCCAGGATCTGTTCCCTATTTCAGTGCCTTCCTAGGACACAGGGGACTCCTTGACGCTCCCCAGGCTTTCTGTGCCCAGGCCTCTGTCCCCAGCGGTGAGGTTGCAGTGAGTGAAGGAGAGGAGGTGATCTGTTCTCCCTCCCCTTCTGCCCATCTCCAGCATCTTCTTCCCCTTCCCTGGCCCTGCAGGGCCTTCTCCAGCTCCCTTTGGTTAGTCCCTGGCCATCCCTCCTGTCCTGGATCCCTTCTCCCTAACTGCAAAATGCCTGCAGCTTCCAGCTCCTTCGTCCCTGATCCTCAAGCGGTTCCCTCCCGTCTCAGCTCAGCGGATCCCCCAGAGTGGAGGAGGCCTCTCCATGAGGAGGGGAGCAGCCCAAGGCACCTGTCCTCTGACCCACCGGCAGCGAGTGCGCAGGTGTGAGTGTAAGTTCATGTAGGAGAGTGTATGCGTGTGCGCCTGTGCCCTGCTTGCAGGCAAGCAGGGCTCCCTCATGTAGCCCCGCCTTCCCCCTGCTGGGGGTCCACCACATCGCTGCTCTTTCTCACAGTCTGCCTCTGATGAGGGCGAATTGCTATGACATTCCAAGCTCCAATAAAGACTGTCCCAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025:ENST00000007414:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(11.7=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(5.7=54.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACACCAGGCTCGCTTCTTC
R:
CCTTTGGTCTCAAGGGCAGTG
Band lengths:
245-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development