BtaINT0105891 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020332 | OSBP
Description
oxysterol-binding protein 1 [Source:RefSeq peptide;Acc:NP_001192899]
Coordinates
chr15:84114934-84115577:-
Coord C1 exon
chr15:84115357-84115577
Coord A exon
chr15:84115271-84115356
Coord C2 exon
chr15:84114934-84115270
Length
86 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
CCCCGCCTCCTGCCCGACAGGCG
3' ss Score
9.19
Exon sequences
Seq C1 exon
GAAGAACGCGGAGAACATGTACTACTTCTCCGAGCTGGCTCTGACCCTCAACGCCTGGGAGGCCGGCACTGCGCCCACCGACAGCCGGCTGCGGCCCGACCAGAGGCTGATGGAGAACGGGCGCTGGGACGAGGCGAACGCGGAGAAGCAGCGCCTGGAGGAGAAGCAGCGGCTTGCGAGGAAGAGGCGCGAGGCCGAGGCCGTGAGGGCCACGGAGGACG
Seq A exon
GTAAGGGCGCCCCGCCGCGTGTCCGCGCCCCGGTTGAGGGAGGCGCCCGCGGCCCTGATCCCGCCTCCCCGCCTCCTGCCCGACAG
Seq C2 exon
GCGCGGCCCACGACCCCTACAAGGCGCTGTGGTTCGAGCGCAGGAAGGACCCGGTGACCCGGGAGCTGACGCACATCTACCGGGGCGGCTACTGGGAGTGCAAGGAGCGGCAGGACTGGGACTCGTGCCCCGACATCTTCTGAAGGAGCCGCCGGGGAGGAGGAGCCCGCGGACTGCTGCCGGGCCGCCGCCGAGCTCGTCTGTCTTAACCAATCACTTCTTGTTCCGAATCAGTCACCAGAAGCAGACCCCGTTGGTGGTGATTGGCTGGTTGCCTTAGCTGACTGACCCTGAAATCAACATTCTGACCCCCGCGTGCGTGTCGGGGAGGCGCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020332:ENSBTAT00000027095:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(19.6=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(8.8=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACCAGAGGCTGATGGAGAA
R:
GTCCTTCCTGCGCTCGAAC
Band lengths:
175-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development