HsaINT0118539 @ hg19
Intron Retention
Gene
ENSG00000110048 | OSBP
Description
oxysterol binding protein [Source:HGNC Symbol;Acc:8503]
Coordinates
chr11:59341871-59344498:-
Coord C1 exon
chr11:59344278-59344498
Coord A exon
chr11:59344193-59344277
Coord C2 exon
chr11:59341871-59344192
Length
85 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TTCCTCTCTTTTCCTTTTAGGCA
3' ss Score
12.11
Exon sequences
Seq C1 exon
GAAGAATGCAGAAAACATGTACTACTTCTCAGAGCTTGCTCTGACTCTCAATGCTTGGGAAAGTGGCACTGCCCCCACAGACAGCCGGTTACGACCTGACCAGAGACTGATGGAAAATGGACGCTGGGATGAAGCAAATGCGGAGAAGCAGCGCCTGGAGGAAAAACAAAGACTTTCCAGAAAGAAGAGAGAAGCGGAAGCTATGAAAGCCACAGAGGATG
Seq A exon
GTAATGAACTTCCCTTCTACTCTTCTTTCTTGATGCATGGAGAATGCCAGCACTAATTTTTTTCTTTCCTCTCTTTTCCTTTTAG
Seq C2 exon
GCACACCATATGATCCCTATAAGGCACTGTGGTTTGAGCGGAAGAAGGACCCTGTTACCAAGGAGTTAACCCATATTTATAGGGGAGAATACTGGGAGTGTAAAGAAAAACAGGACTGGAGCTCATGCCCGGACATTTTCTGAAACGGCAGTAACAAAAAAGAGGAGCATATAATGGAGAAGAGGACAGAGGATGTGTGGGAAAGCTGGAAGTTGTGACTCTCTTACCAAGTGCTTTCCTCAAGTTTGTCTCTCTTGACCAATCATTTTTTCCAAATCAATCACCAGAAGGAGACACCAGTGGTGGTGATTGGCTGGTTGCCTTAGCTGATTGAAACTGAAATCGACATAGGAGATACTATGTCTGTAAGGGAGAGGTTTAGTGGCCGAAGGTTAGTGTTATTCCACATCCACGAAGTCAAGTATTCTTGGCTCTTCTTTCTCCCTCTGCCCCCATTTAAGACAATGTCACTCACCCTCCCCTTGTAGTATCCTGCTCAGCCAAGATCTGCCTAAGATTATGATTCAGGGGCATTTTGGTGCTGTTAAAAGCAAGAGCCGAATTTAGAAGTTCCCTTAAAAAGAAACACATAAGACTTACCAATGGAGGCATTGTGAATGGTTGCAGTGGAGCTTAGGTATAACATCATCAAGTGTGTTCACACGCGGGGTCGGTTTAATGGAGTGTCCACGCGGAGATAACTGCGATATTGGAACACCTGTGAGAGAGATTGTTCTATAGGGCTGGAATATTCAGAGTTACATTCTTGGAAGTTTCTGTTTTTACTTGCATCAAACACCCCTCTGTTGTTCTCCATCATCTTTAATAGCAACTGGAGACCACTTTGGTCATTGGTAAGGGGGTGCATTCTCCTCACAAAGGGGTTTTATGGACTTCCTCAGGCGGAGAGCTTCTGAGAACACAGGCAGGATGGAAAAAGACTACTAGCCACTTTTGCTTTCCCAACCCCCCTTAATGCCATCCTTCATTGTCTTTCTGGCTTCTCTTCTTCTGGCACAGTACCATTTTGGGTCTGTGCCCCAGTGTGGAGCAAAACATTGCCTGTCCCATTCTGATATACTTCAGAATTTGAGAGCAGAAGTTAATGTGGAACAAAAGTTTTCACCATCTCTCAAGCCCCAAGGACTGGAGCCACCTCTGGAATAATGTGTTAAATATCTGTATATTATATATATGTAGAGAAAAATCTAATTTTTTGGTTTGATTTCCTTCCCATTAAGAATCTTGTTTTTTGATACCCTTGTCTCCCTGAGACTCTTTCTTGGACACGTGTTGATGTGGATGGCACTCCTGCTCTCCATCTTTTATGGGCAGAGAGATTTCAAAACCTGAGCAGGATCATGTCTGGCAGTTACTAAACAGGGACTTTGTCCATGGTTTGTATCATGGGGTGCCTACTGCTGTCTAAACTCTGCTCTCCTAATTAGCTGACTCTTGAAAATGAAATCCTAACCTCTTTCCTGCCTCTTTTCTTTCTCTTTTCAGGAAGAGTGTGGGTAGAAAGTCCGGAGGGCAACTTCCAATTTAATTCTGCTCTGTCCGGCGCATAGGCTGAATTCCAAAAGAACTTTCTTCCTAGGATGTGGGGCTTAAAGCACCGTCATGTGGGGTGGATCAGATAATTGCTCCTGTGGGGCCCTGGCTTCCTTCTCTGTTTGTGCAGTATTTGTTTTTGTTGTCTTGTTGAGAAATATCCCCTGTGCAACCCACCCTTGGTTGAGGATCACAAATTGAGGTGCCTTCCTTGTATGCTTTTTGTTAGTATTTTTTGTTTTTGTTCCTTAACTGCTGAGCCTCAGCCAGCGTGGGTCCTGGGGGAAATACCATTCCAAAGGAAGCCATCCCTATGGGGAAATTGGTTTTACTGGGTAAATTAATACTTTTATTTCTTCCCCTATCCCTTCCTTCCTAGTTGTGATAAACATGGGAGAGGAGTGACTTTGACTGCTGGGGAATTTCCTCCTAAGAACCTTATTCCCAAAATAAGCCAGGGATTATGTCAAGGCTTCTTTCAAGGAGGCTCATAAAAGCAGTGACCTCATCCGGGGCTTTGGATAGAGTGAGAATTCCCCAACTAAATTGGACTTCTCTGCTTTATCCCCTTCTCTTCCTTCACCATCTGCACTACATTTCTGGCTGATCCCAATCAGATTCCCGCTAATGGAAGAAGTTTAGAATCTTTCAGGTGGAATAAAGTCACATGAAAACAAAACACAACTATATATATTTTCAGTTTTTTTGCCTTATTGATTTTTTTCCAAAAAAAAAAAACTACTAAATTAAATAATTTTTTAAAAGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000110048-OSBP:NM_002556:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(19.6=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(8.8=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAAATGGACGCTGGGATG
R:
TAACAGGGTCCTTCTTCCGCT
Band lengths:
168-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)