GgaINT0008019 @ galGal3
Intron Retention
Gene
ENSGALG00000007758 | F1NRB3_CHICK
Description
NA
Coordinates
chr15:11037310-11038172:-
Coord C1 exon
chr15:11037952-11038172
Coord A exon
chr15:11037453-11037951
Coord C2 exon
chr15:11037310-11037452
Length
499 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TGCTTCTTCTCCCCATGCAGGCA
3' ss Score
10.23
Exon sequences
Seq C1 exon
GGAGAACGCCGAGAACATGTACTTCTTCTCCAGCCTGGCCCTCACCCTGAATGAGCCCGAGGAGCGCGTGGCCCCCACGGACAGCCGGCTGCGCCCCGACCAGAGGCTGATGGAGAGCGGCCGCTGGGATGAGGCCAATGTGGAGAAGCAGCGGCTGGAGGAGAAGCAGAGGGCTGTGCGCCGCAGGAGGGAGGCTGAGGCTGTGGAGGCCCTGGAGGAAG
Seq A exon
GTGGGATGATGTGGGGTGGGGAATGGGGCGCTGCAGGGAAACCCTGTAGGGCTGGGGAGGGAGGACGGACTCCTCGTCGTGGAATCATTGAGTCCGAGAATCATGGAATGATTGAGGTTGGAATAGGCTTCCAAGGTGAAGTCCAACCACCAACCCATCCCCACCATGCCCATTCGTAGAATCGTACAGCCATTCCTGTTGGAAAGGACCTCTAAGGTCACCATGTCCAACTGCCAGCCCATCATTGCCGTGCCCACTAGGCGATGTCCCTAAGTGCCACATCGTTGTGAGGGATGAGGTGGAGATGGGCCGATGGTTGGGCTAGATGACCTCAGTGGGCTCTTCCAACCTTAATGATTCCACGATTCCATCTCCACATTTCTCACACACCTCAGGGACAGCGACTCCACCGCCTCCCCGGGCAGCCCATTCCAACAGCTGAGCACTTTTTCCAAGTACCTGACCTCATCTCCATCCCTTGCTTCTTCTCCCCATGCAG
Seq C2 exon
GCAAGGACTACGAGGGCTACATCCCGCTGTGGTTCGAACGGAAGGTGGATCCCATCACGGGGGAGCTGATCTGCGCCTACAAAGGCGGCTACTGGGAGGCCAAGGACAAGCAGGACTGGAGCTCGTGCCCCGATATCTTCTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758:ENSGALT00000012578:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(19.6=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(8.7=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACGCCGAGAACATGTA
R:
CTCCAGTCCTGCTTGTCCTTG
Band lengths:
342-841
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]