RnoINT0105692 @ rn6
Intron Retention
Gene
ENSRNOG00000019645 | Osbp2
Description
oxysterol binding protein 2 [Source:RGD Symbol;Acc:1310505]
Coordinates
chr14:83944321-83945944:-
Coord C1 exon
chr14:83945718-83945944
Coord A exon
chr14:83945487-83945717
Coord C2 exon
chr14:83944321-83945486
Length
231 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCACTGTGCCTGCGGAGCAGAGA
3' ss Score
1.59
Exon sequences
Seq C1 exon
GGAGAACGCGGAGAACATGTACTATTTCTCGGAGCTGGCCCTGACCCTCAACGAGCAGGAGGAGGGCGTGGCGCCCACCGACAGCCGCCTGCGGCCGGACCAGCGGCTGATGGAGAGGGGCCGCTGGGACGAGGCCAACACCGAGAAGCAGCGCCTGGAGGAGAAGCAGCGCCTGAACCGGCGACGGCGGCTGGAGTCGTGCACGGCCGGCTGTGGCGGGGAGGAAG
Seq A exon
GTGAGCACAGAGCATAGCGTAGCGGGGGAACGGATGGACACCCACCCAGGGAGTGATGGTGTGGCGTGGGTGGGGGGGGTGAGGGAGGGTTTCCCAGGGTAGAAGGGAAGGTGAGAAGGGGTAATATACACCGGGGGGGGGGGAGGGTGGAGAGCTGAGGAGGGGGCAGTGAACCCCGGGCGTAGCCTAGGCAACAGGCAACTCACCCCGCCCACTGTGCCTGCGGAGCAG
Seq C2 exon
AGAAGGAGTCAGATGGCTATTCGCCGCTGTGGTTCGAGAAGAGGCTGGACCCGCTGACCGGGGAGATGGCCTGCATATACAAGGGCGGCTACTGGGAGGCCAAGGAGAAGAAGGACTGGCACATGTGCCCCAACATCTTCTGAGCCACTCCTGCGGAAAATACAGGCACCTGCACTGCCTGTCAGACTTTTCTTTAATGCACCCGATTTAATACAGAACCCACCAATGCGTGTGTGCGCACGCGCGTGACCACACCGCTTAAGAAGGGGTAAGGGCTGACCTGGGTTCTTGCCAGCCCCAGGTCGCCGGGTCACGTGTGCCCGTTGTTATCATTGACTTGGGCCCCATGGGCACCCTAGTTCCCAGTTACCACAACTCAGGCCGGCTGGCCGGGCCATGGGCTGCCCAGGTCACTAACCCCAACCCAGGGAGGAAATATTTCCCTCCTAGGGAGCCTCTTTTGACTTTTTTAAGAAAAAAAAATATCCATTTCTTTCCAACGATGAGGTTTAGTAAATATTTTTAGCACATCACTTAGAAGACTCACTTTCCAAGTGTTCGTTCTTGCCACAGAACGGTTCTGGCAAGAAGCCCGTTTTTAAAGACCTGAGGAAGCCAGGCCCCTTTGAATGGGGAACACTTCAAACACAGCCCGGCTTTCTAGCTGGACTGTCCAAGCTCCAGGAGCGCAACACCCGCAGAGACAGCAGGAAGCCTGGCTGGCCGGCCCAGCATGGCATGCAGAGCCCGAAGGGGGAAGGCAGTCAAAGGCAGCCGCCCCCCCCCCCCCGTGCCAGGCCTTGGCCATGGTGGGGCAGTATCCCAGTCCCAAAGAGGCCAGGAAGGGCTGAAAGGCAGGGCCCTTAGGTGCTTCCTGCCCAAGAATCAGGCCCCCAAATCAGCAATAAGGAACAAACCCTTCCTTTAGCCTGGGCTGGTGACCCAGGCTCCCAACACCTGGCCTCCCGCCTTGTCCTTCGGCGGCATCAGGGTGCCTCACTCCGAAGTCCTGACATCTTTATTTGCCTAATTTATATATATATATGATATACAAATATATATGACATAGCTATTTTGCTTAAATTTCTATGATACGTGAAAGTGAAAAATGATGAAGACAGACTGCCTGTCTGAGTTTGGCCTCCTGCCAGCCCCGCCCTCTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019645:ENSRNOT00000065501:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.545 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(20.2=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(8.8=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATTTCTCGGAGCTGGCCCT
R:
CCCAGTAGCCGCCCTTGTATA
Band lengths:
302-533
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]