BtaINT0105904 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019146 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr17:71892952-71894872:+
Coord C1 exon
chr17:71892952-71893178
Coord A exon
chr17:71893179-71893353
Coord C2 exon
chr17:71893354-71894872
Length
175 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCCGCTGTGCCGCCCCACAGAGA
3' ss Score
9.68
Exon sequences
Seq C1 exon
GGACAACGCGGAGAACATGTACTACTTCTCCGAACTGGCCCTGACCCTCAATGAGAACGAGGAGGGCGTGGCGCCCACAGACAGCCGGCTGCGGCCGGACCAGCGGCTCATGGAGAAGGGCCACTGGGACGAGGCCAACACGGAGAAGCAGCGGCTGGAGGAGAAGCAGCGCGCCAACCGGCGCCGGCGGCTGGAGGCCTGCTCCCGGGGCTGCGGGGTGGATGAAG
Seq A exon
GTGAGCCGCTGGGAGAGGGGCCGGCGGGAGAGGGGCCGGCGGGAGAGCCGCGGGGTCGCCCAGGAGCTGGGAAGGGCTGGGGGCTTCTGGCCGCGGGGAGGGGGCAGGGAGTGGCTTTCCGGGGACAGCGTCGGAAGCAGGCCGCCCATCGCCGCCCCGCTGTGCCGCCCCACAG
Seq C2 exon
AGAAGGAGGCCGAAGTGTATGTGCCACTGTGGTTCGAGAAGAAGCTGGATCCGCTCACCGGGGAAATGGCCTGCGTGTACAAGGGGGGCTACTGGGAGGCCAAGGAGAGGCAGGACTGGCACATGTGCCCCAACATCTTCTGAGCTCCGCCCGTCCTGCGGACACAGGCGCCCGCACGCCGCTCCACCTCCTGTTTCGCGCACTCAGTTTAGCGCTGTGTGGCCCTCCCACCCCACCGTTCCCTTCTGGTTTAATAACACTTTTTGGGGCTCTCACCTTGGAAGGAGGAAGTGCTGACCCGGGTTCTCTCAAGCCCCCAGGTGCCCCGGGTCTCCCACCCGCCTTCACCATGGACTCGGGCCCCCTGGGGCCCCCAGCTCCAGTTCCCACAACTCAGGCAGGCTGGTCCAGGCCCTGGGCTGCCTCAGTCACCAGCCCCCCAGGGAGGAACCGGCCCCTCCCAGGGAGCCACTTCCGAGTTTTTTAGAAAAAGTTATCTCCCATTTCTTTTCAGCCAAGATGTTCAGTAAATATTTTTAGTACAGCACTTAGTGGACCACTTCCTAACTGTGCTTTCTTGCCACACAAGTGTCCTGGCAAGAGCCCCTTCTCTTTAAGACATCAGGAAGCCAGCCAGACCCTTTTGGGTCAGGAGCGCTGTGCAGCCCCAATAGCAAGGCTGTCTGTGTCTGAGCTGCCGGCCCCCCGGAAGCCCAGGACCCCCAGAGGAAGGAGCCAGGAGAGCACAAGTCTCTGGAGCTGCAGCCCCACCCATGGTTGGGAAGGGGCCCTGCGGGGCCGCCGCGTGGGTCTGAGGACAACCGCCCCCGTGGAGCCCAGCCACCTGGGCTACTTCCCACTCCGAGGGGCCCGGCGGGCCGCAGGCGCTTTGGCCACAGAACCACGCCACGTCAGCAATAAGAGCCGAGCCTCGGCCCAGCCTGGGCTGGTGGCCTGGGTGCCCGAGAACCCAGCGTCCCACCTCCGGGGTACCCCATCTCAGCGCCCGTGAGCTCTCTATTTGCCTGATTTATATGTATGAGATATAAATATATACAAAATAGCTATTTTGCTTAAATTTCTATGGTATGTAGAAGTGAAAAAATGATGAAGACAGGGTGCTCCTGTCTGAGTTTGGCCTTCCTGTCAGCTATGCCCTGCCCTCTCCTCACACCCCCTTCCAGTGGCTTCTGCCAACCACTGGGGGGAATGGGACTGGACTACTGTGGCCACTGTCCCAGCCCCTCAGAACTCCTATTCCAACCCGTCACACTTTGGTTTGGTCCTGAAATGTCATCACAGGGTTTTACTTTCTACTCCAGGACTGGTTCTGTTTTTATAAAAATACAAAAGTGAAAACACCAACGTATGAAAGGCCTTAGGGTACCCACTGGAGGGTGGGCAGGCAGCCCCACACAGACTGTGGCAGAGCTGTTCAACGTTCCTCTTCTCAGAACTGTTTGGGAGTGAGCACCTTCTGACCAGTAATAAAGAAGCCTTGGATTTGGAGCTTCCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019146:ENSBTAT00000025485:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.532 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(20.0=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(8.7=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTTCTCCGAACTGGCCCT
R:
CGAACCACAGTGGCACATACA
Band lengths:
242-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development