GgaINT0008019 @ galGal4
Intron Retention
Gene
ENSGALG00000007758 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr15:10698915-10702656:-
Coord C1 exon
chr15:10702436-10702656
Coord A exon
chr15:10701937-10702435
Coord C2 exon
chr15:10698915-10701936
Length
499 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
TGCTTCTTCTCCCCATGCAGGCA
3' ss Score
10.23
Exon sequences
Seq C1 exon
GGAGAACGCCGAGAACATGTACTTCTTCTCCAGCCTGGCCCTCACCCTGAATGAGCCCGAGGAGCGCGTGGCCCCCACGGACAGCCGGCTGCGCCCCGACCAGAGGCTGATGGAGAGCGGCCGCTGGGATGAGGCCAATGTGGAGAAGCAGCGGCTGGAGGAGAAGCAGAGGGCTGTGCGCCGCAGGAGGGAGGCTGAGGCTGTGGAGGCCCTGGAGGAAG
Seq A exon
GTGGGATGATGTGGGGTGGGGAATGGGGCGCTGCAGGGAAACCCTGTAGGGCTGGGGAGGGAGGACGGACTCCTCGTCGTGGAATCATTGAGTCCGAGAATCATGGAATGATTGAGGTTGGAATAGGCTTCCAAGGTGAAGTCCAACCACCAACCCATCCCCACCATGCCCATTCGTAGAATCGTACAGCCATTCCTGTTGGAAAGGACCTCTAAGGTCACCATGTCCAACTGCCAGCCCATCATTGCCGTGCCCACTAGGCGATGTCCCTAAGTGCCACATCGTTGTGAGGGATGAGGTGGAGATGGGCCGATGGTTGGGCTAGATGACCTCAGTGGGCTCTTCCAACCTTAATGATTCCACGATTCCATCTCCACATTTCTCACACACCTCAGGGACAGCGACTCCACCGCCTCCCCGGGCAGCCCATTCCAACAGCTGAGCACTTTTTCCAAGTACCTGACCTCATCTCCATCCCTTGCTTCTTCTCCCCATGCAG
Seq C2 exon
GCAAGGACTACGAGGGCTACATCCCGCTGTGGTTCGAACGGAAGGTGGATCCCATCACGGGGGAGCTGATCTGCGCCTACAAAGGCGGCTACTGGGAGGCCAAGGACAAGCAGGACTGGAGCTCGTGCCCCGATATCTTCTGAGCTGCTGTGCTTGCTCTGGTGTGGCCAGCCTGCAGCAGGACAGACAGATGGAGGGACAGGAGGACACACGGCAGCGTCCTGCCAGTGGTTGACAGTGCAAATAAACACACACAGCGTCAATACAGGCAGAAATTCGACAGAGAGAATCTAAACAGGGATTCCAAACCTATTTTTTTATGCACTAATAAATAGCATCTTCTTTCTTTTTTTTTTTAAACAGTGGCTTTTTCAGCTACTAATGAGGAAAGAGGACACGTGGCTCTGGTTCGTTTTTAGCCTCGGGTATTTATTGCTGTCAGGAGCTGCTGCCTATATCTTTCAGCGCCTCGGCTGTAGTGGCTGAGACAACAACTTCCAAAGATGCTCTCGTGGTGGGGATGCCGTGCGTTTGTGTGAGCTCTTTCTTTTGGCATCTTTCCCCCCCCCCCACTTGTTAAAAAGAAATGCTGTTCCTGGTTCAGATTCCTTCAAAAACAAACAAAACCAGCTGTGAATCTCCGCCCAGAAAACAGCAGGGGCTGTGGCTGTTGCTGGAGGCTGCAGGTGGTTCCTACAGCTGCCCCCGTCGCACCCATCAGGACGTTTCAGCTGGTGACCTGCTTTGTTTCCATGACTGTGGTGCTGCTGGTACAGAGAGGGAGGATCCAGGAGGTGAGGTCCCACCACGACAGAGGGAACCAGAAACCTGCACACCTGCGTTTCGTTTTTCTCTGGGTCTTTATCACACCGTGCTGAGTGCTCCCTCCCGTGGGCCACCTGTAGCTGGACTGCCACGTCCCCATCGGAAGATAATTAGCAATAATGAACTTTGAGGCAATGGGAACTGCGAAACCTATGGAACTCTTATGCAATCAGGTTCCTCCACCATCAGTCTCCTCCTGGTTGGCTTCTCTTCCAGCACCTGCTGCCTGCAGCAAACCTGTGTGTACAGTATACATAGACCTCGTATGGCATAACAGTAGTGAGTGGCTATTGGAGTGGCAACACCCACTGATCTCAACGTACCCCTAAATCTTATTTATTTGCTTCTAATTTATATATATATATATATATATATAAATATATAAAATTATTTTGCTTAAATTTCTATGGTACACAATAGATGAAAAAAAATGATGAAGACAGATGTATCTGTCTGAGTTTTTGTAGCACGAGGATGAGTGCTTCCCTGGGCCCATCCCCAGGCAGTGTGCGTAGGGGTGATGGTGATTCATTCCCAAAGCAGAGAAGCGACGTTCTGCTCTGAAGCTCTGAAAGCTGCTGTGTTAGCTGGTTGGATGCAGCTGGCTCCAGCTGTGCCACATCCAGCCCCAAGGCACACAGATCTGCGTTGGAGATGCTCCCACCTGAATAATGCCTTATTTTCCTCTTTCTTTTCTTGTCAATGCAAGAGAGCTGGGAAAGGTGAGCAGCCCCTGCACCCCAGAATGTCCCAGAGCTGGAGCCTGGTGTCCCCAGGACGCGGGGTGACATTGCTCAGGGACTGTTGGCACCATGTCCTACAGCTGGGACACAGCGAGCTCCTGTCCTCCGTTCCCTCCCCGCTGTGTCTCTCCCAGGATCACCATCACAGACACTGCACAGCTTAGCAGAGCCTGGGGAGTGTAAGGAGTGCCCCAACAACACAAATCCCCCCCCCTTCCTTTTTTAGGCTAATTTTAAAACTTGTGGTATCTTCCAGAGATCACCAAGCAGCAACACTTCATCTGAGCACCACCTCCTGGTCTTTCTATTTCCCCCATACCCCCCACCAAAGGATTTTAATGTCATTCTACTGTAAATGCTGTTGAATGTATTTCTTTTCGAGCAATATATTGTGAGTGACCCCTCTTCTCCTACACGGTAATAAAACTTGGATTCAGGAGTTTTAAAAGGCGCAGTGCTGAGGTTCTCACTTGCTCCTCAAATCTGCAGGTTGGGGGTCCTGGGGGGAGACCCCGGGGTGGCCGAGCTCTGGGCGTGAGGTGACCCTGTTGTCCAAGGAGTGTTGGTTTGTCCATTGGGAGACCATGGAGACCCAGAGAAGGGTTGTCCAGGGAAGGTTCATTGGGAGGTGGACCAATGGAGGTGGCCCAAAGAAGGAGATGGCCAAAGGACGGTGGCCCAGGGGAGGAGACTGAAGGATAGTGGCTGTGGGGAGGTTGTCCAGGGCAGGAGGTGGCCTGGGGGATGAGGTCCAGGTAAGCAGGGACAGGAGAAGTGGCCGTAGGAAAGATGCTCTCCGTGGAAGAGGTTCTCCAGGGGAGGTGGCCCAGTGGGGACAGAGGACCAAGGAGGGGGTCGTCCTGGGAGGGCGAGGGCAGGAGAGGGTCGGGGGAGGGGGTCATAGAGTCATAGAATGGCTTAAACTGGGAGGGGCGTTAAAGATCATCGAGCTCCAGCCTCAGTGGTTGGAGAGATGGTACTGCAGAGTCCCAGGGAGAGAATGGTCCCCCAGGGGGAGGAAGTCAAGGCTGGGAGGGATGGGAGAGGTGTTCTGGTGGAGGAGAAACAGGAGCGGAGCCTCAGGGGGCATTTCCTGGGGAGGAGGCCCAGGGGAGGTGGAGGAGGCCCTTGGGCAGGCTGGGACTGGCCAGGACACCACAGGGTTGCCAGGTGACAGACAACAGCGTGCCGAGCAGCTCCGGGGTGCACTGTGCCTCCTCCCAGGGAGGTTCCTCTCCGTGCCCCCCGGCCATCACAGCGCAGGCAGCTGAGCCCGGCTGCATCCCGCTTGGGACGTTCACTCTGAAGCGTAATGAGGACCTTGAGCCTTCTGGAGCAGAGCTCTGCAACCCGGGGCACCCCATCCCTGTCCCCCCCCCAGCAGCGCAGTGCTGGGACGTATGGCAGAGCCTGCAGTGCCTCTCCTGACACTGTCGATGTCCGTGGGACGGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007758:ENSGALT00000012578:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(19.6=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(8.7=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTTCTTCTCCAGCCTGGCC
R:
CAAGCACAGCAGCTCAGAAGA
Band lengths:
358-857
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]