DreINT0108712 @ danRer10
Intron Retention
Gene
ENSDARG00000053487 | osbp2
Description
oxysterol binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-091113-18]
Coordinates
chr10:7958020-7962306:-
Coord C1 exon
chr10:7962086-7962306
Coord A exon
chr10:7959461-7962085
Coord C2 exon
chr10:7958020-7959460
Length
2625 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGA
5' ss Score
6.65
3' ss Seq
TTGTGTCCGGAATTTAACAGGTA
3' ss Score
6.39
Exon sequences
Seq C1 exon
TGAGAATGCAGAGAACATGTATTACTTCTCTTCTCTGGCGTTGACTTTGAATGAGCTGGAGGACGGTATAGCCCCCACTGACAGCCGTCTGCGGCCAGACCAGCGGCTGATGGAGGCTGGGTTGTGGGATGAAGCGAACACCGAGAAACAGCGTCTGGAGGAGCGTCAGAGACTAGAAAGAAGGAAGAGAGATGCACAGGCCAACCTCGCACTCGAAGAGG
Seq A exon
GTGAGACATTCACACTCATTTACACTCTTTGGCCACTTTATTAGGTGCGCTTTGCTAGAAGCTGTTTTCACATGCATGGTTTCACTACATCCCAAAGATGCTCAATTGCATCGAGAGCTGATGGTTGTGGAATCTTGCTAATTTTAGCCAATCACATTGAAAATACAACTTTGAGATGCCACATTCAAAATCACTTAAAGTCACTTGAGTCCAGTGGTTCTTGATGAAAAAAGGACTTTGATCAAGATTTACTGGAGGGACTGTTTAATCTTTTTTTTTTTTTTCTATCAAGTTCTTCTTCTTTACATGCTGATATTCAGTTTGCACTTCAGCAGATCGTCATGACCACATCAACATGCCTAGATGCACATAGTTACTGACATTTGACTCTCTGATTACATTGTTCTATACATGTTTATGCATGTCTCTTACATTAAGACACCTGGTGTATGACCTAGTTATTGCAGTCCAAATTCAAAAACCTTTGAAACTTTAGTTTTTTTTACCAATCTCCTTCTCCAACGATTGGAAGCACACACAGTTTGCCAGATTGGTGACACAAGCAGGAGTGAGCATGCCTAATCATTAAGCCATACACTGTAACAAAGCGAATACACAAAACACATTACTCTACATAGTTTTGAATGGGGAAAAGTGAAATGTTCAATATGGCAAATGAAGCTCTGCCTACTAGTACAGTAGCCAATCATTGATCGCTATAGGCCTTTTTCTTGGAACGCAAAATTACCCATTATGCTTTGCGTGTATGCGCAAGGAGAACGCGAAGAACTTCCGGTCGGCAGCTGATGCGTGTAAACAGTCACATTTGGACAGCTTTGAAACGATAGTTTTAATCTATTTTACCTGCTTTTATCCTCTTTGAACTAATACTGTTGTCCATCAGCACCATCTCCTGGACTGATCATTTAAAGAAATGCGATCTAATAGGATGGAAAACAGCTGCTGTGAGGCGTTTTCCCCTCGTTGTCAGACGTACGGCATCTTCTGCAGTTGAAATGAAGCCTTGTCATCGCTAAAGTCAACATTTTCTCTTTATTTCAAATACATAACCAGCCCAAACAAATGTAATTCACCAAAATGTTTGACACACACACGTAGACTGTACTGTGCCACTGACACACTGATTTAATAACAGTGACAAAGTGAAAATATATACTAGTGTCATTTCAAAATGACAGAAAAACAGAAACCGTGGTAAAAACAACACACGAAATACACAAACGGCTCGCGATTAGAATGAACAGCAAATCAGCCAGCAGAGGATCAATAACAGACTTTTATTGGTCATTTTTGTAAATTGCACGACTTTCATACCTGTTAAGTTTCATGCCAGTACTCTGGTTTGCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTTAAAGAGCCGCCGAGCTAACAGCTGACAGGCTGTCAGCACAAACACACTATTTCTGACGGCAGACACGTGAACTAGGAGAACGTTTTTCTCGTATTTCTGACGCGCTTGAACCACATCGACAGATTATAACGGCTTTAACAGACACATTTCTAAGTTGTGTGTCACAAAAACACTCTGTTATCCATTAAAAACGTTATTAAAAACCCATTTTCGGAGCACAAATTACCAGTTGTACACGCTGTAAACGGAAGTTTTTAGCATTCTACCGGAAGACGCTGGTCGCTATCCCGCCCTCCATGCAGCAGCCATGAAAAAGGTCTATAGACTGAAGTTTCTATAGGGGAGAAGCTCGGATCAGGCGTGTGCTTTTACGACAGTTTGGTGGTCAACAAACACACTGGGATCTCAGTAAATACTTGCTTTATAGACATAAGAAATATGTGAAAGCCCACAAACTTGTAAACAAAGAGTGACTGTCACTCTGGAGGAGATTCGCCATCAAGCCCAAGTTGTGGATTAATTCAGAAGACCAGCGTTTATCCAACATTATCCAGAGGATGATAATGTGTAGAACGGCCAGGAATGAGTTTGGTGTCGTCATCTCGGAAAAAAATGCACATTTTGTTTGATTCTGATGTTTAGAAATGAAACTTTAGAAACTGTTTTTTTTTGTATTGTTGATTCCAAATATGTGATGTAATCATAATCTTGGCAAACCGTTTTGAATAATTTGATGTTTCCCCATTTAGACAGAATGCCCGAGCATACTGCCTGAAAGGAGTTTCAAAGATGGCCCCTGAGTGAAATTACTTGCCTTAAAGGGACTTTAATTGTAAGCTGTTCAGCTAATGTTTACATTTGTAATATTCGTATTATTTTCTAATTGCAAAACATCTTGTGGATTTTTAAATCTGCGTCTCATTTCGGAGGATGAATAAAGCAACTGGAGATGCTGAAATATAATTGAGTAATCTGGCAGTGTAGATATAATCAAAGGAGAGCATTGTTTTTCAAATTAACAGGTATGCTCATTAAGCATGTTTATTAAATATCTGCAAACACATTACACGTTTTTATGCTTTGAAAGAGTCAAAAACTTTGATACAACACCGTAAATGGCAGTTGTACCTAATAAAATGGCCACTGAGTGTACTCTAAAAAGCAGGCTGTTATCCCATTACGTCACCTAACACATTGTGTCCGGAATTTAACAG
Seq C2 exon
GTAAGGAGGTGGAGACCTACCAGCCCATCTGGTTTATGAAAAGGACTGACCTAGAGACAGGTGAGAGCAGCTTCATGTACAAAGGAGGCTACTGGGAAGCCAAAGACAGACAGGACTGGAGTCAGTGTCCAGCCATCTTCTAAAGCCTCTCTCCTCAGCCAGGACCAGCCTGCCATTCCAATAATCCTTGAAAACTGCTTTCCAATGTTTTCCAAGGATCTCAAACATGCACAGAATATACACATTTTGTCTTCTAAGGCACCCTCGTGTATATAAATATATATCTTAATTTGCTGTTAGCCTGTATTGAAGCAGGAAAACTTATATTGCATGAACAAAAAAGCACAATAGGTGGCAGCACTTTATAAATGTCCCAGTGACACACACTTATAATGTTAATGATCTGAGGAATGTAACACTTCACCAGGCAAAAGACTCTTCCTCATGCCTGGTTCGCTTCAGGTCAACTGTATAACATCCACCATTGTGTGATAAAAGACGTTCAGCGCATTTATGAAGCATTAGGATCGAGGGCCCTCAAGACCGTGTTCCTCCATTGAGCTGTAGAATAGATAGTAGTAACGCTCCATAAACAACCTAGATAGACTCTAGATCAGTGAATCGATGTTGCTTTTACAAAAAAAAAAAAATTACTATCAAAGCTGATTTATTCAATAGTAATGTGAGAGTTCTACTCTAGCTGCCCGTTTAGTTATTTAGCACAAGCGTTATGTAAATGTCATTGTGTCGGTGATGAATTAAGGCTTAATTGAGATTCTCCATATACAGTCATGACTAAATGTTTGCAAACATGATACACTTGCACAATTATTTATTTATTTTTGGACAGATGAGCTATTGCAGGTCATTCAAAATGACTCATCTGCATGCAGTGCAGATTTGTTGAATTATGCAAATTAAGCATGCACTTGGACAGATATGCTAATGGAGTATTCGTCTAACACTGCATCAGGTCACCTTTTGGGTTGTTTGCGAACCTTTGGCTGTTGCTGTGTTTTTAATATTTGTGGTGGCAATACTTTGTTATTTCCAATATTAGCTGCTAAAGTACATATATGCTACATATGTCATTCACGATGCAAGGAACAGTGGAATATTGACCGTAAACTGTAACCAAAATGAGGGTGAAGGTTAACTCGTATTTGGGCATTAAAAGCAGTTAGGTAAAGTGTATATCATGGAATATTGTAGTACAGTATGTTAAGGACTGATTGAACATGATGTTTATTAATGACTGTGTTTGAGGTTTTTTTTAACCAAAGGTAACGTGTTGTGTGTTTGGAACCACAAGCAATGCAAAAATTACACTTTCCAATGTACTCTGTATTAATCAGACACTAAAAGATGAGTATTAGGATTAGATCACTTGATTATGATGTTGAATATGCTGGATATTGCAATCTAAAGACTTTTAAAATTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053487:ENSDART00000147368:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(19.5=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(8.7=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]