HsaINT0118552 @ hg38
Intron Retention
Gene
ENSG00000184792 | OSBP2
Description
oxysterol binding protein 2 [Source:HGNC Symbol;Acc:HGNC:8504]
Coordinates
chr22:30905837-30907824:+
Coord C1 exon
chr22:30905837-30906069
Coord A exon
chr22:30906070-30906196
Coord C2 exon
chr22:30906197-30907824
Length
127 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CCACTGTGCCTGCCCAGCAGAGA
3' ss Score
5.23
Exon sequences
Seq C1 exon
GGAGAACGCGGAGAACATGTACTACTTCTCAGAGCTGGCCCTGACCCTCAACGAGCACGAGGAGGGCGTAGCGCCAACCGACAGCCGCCTGCGGCCCGACCAGCGGCTGATGGAGAAGGGCCGTTGGGACGAGGCCAATACCGAGAAGCAGCGGCTGGAGGAGAAGCAGCGCCTGTCGCGGCGCCGGCGGCTGGAGGCCTGCGGGCCGGGCAGCAGCTGCAGCTCGGAGGAAG
Seq A exon
GTGAGGCCGGGCGGGAAGGGCGCCCCGGAGGGGAGGAAAGGGGTGCCCGGGTGGGGGTGCCGCAGGGACGGATTCCGGGGGAGCAGGCCACAAGCCCACCCACCAGCCCACTGTGCCTGCCCAGCAG
Seq C2 exon
AGAAGGAGGCGGATGCCTACACGCCACTGTGGTTTGAGAAGAGGCTGGATCCGCTGACCGGGGAGATGGCCTGTGTGTACAAGGGCGGCTACTGGGAGGCCAAGGAGAAGCAAGACTGGCATATGTGCCCCAACATCTTCTGAGCGCCACCCTTGCAACAAATACAGGCGCCTGCACAGCCTGGCCCACCTGTTCATTAATGCACTCAATTTAGTACTGAATGGTCTTTCTCCCAGCCCATTCCCAGCCCTTCCTATTTCCTTTCCTATTTTTTTTTTCTCCCCACACTTTCTTGGGACTCCCACCTTGGAAGGAGGAAGGGCTGACCTGGGTTCTCTCCAGCCCCCAGGTGCGCCGGGTCACCCGTGCCCCTTCATTATGGACCTGGGCCCTACCGGAACCCCTGCCCCAGTTACCACAACTCAGGCCGGCTGGCCCGGGCCATGGGCTGCGCAAATCACCAGCCCCCAACCCAGGGAGGAACTGGCCCCTCCTAGGGAGCCTCTTCGACTTTTTTAGAAAAATGATCTCCATTTCTTTCCAGCCATGATGTTTAGTAAATATTTTTAGTACCGCACTTAGCAGACAGCTTTCCAAGTGTGCTTTCTTGCCACAAAAGTGTCCTGGCAAGAGCCCCTTATTTTTAAGACATCAGGAAGCCAGACCGCTTTGAGTTGGGAGAATTTTGTAGCTCAACATATCAAGTCCTCGATGGTATCTGAGCTGCCCACACCCCCACCTGCCAAGGCCCCACAGAGCCCAAAACAGAAGGGGGCTGCCCCAGCCCAGCAGAGCACAGAGTTTCTGGAGCTCCCATCCACAGATGCAGGAGGGGGTACTGATGGTAACCCCCATGTGGATTTGAGGGCAGCAGTCCCTGGCCTCACCCTAGCCAGCCTGGGTGGCTCCCTAGCCCCAAGAGGCCAGGAAGGGCTGGAAGGCAGGGCCTGCAGGTGCTCCCCGCCCTGAGACCCAGGCCCCAAATCAGCAATAATGAACAAACCCTTGGCCCAGCCTGGGCTGGTGACCTGGGCACCAGAGACCTTGCATCCCTCCTCATCCTAGGAGGCCCCTAGGGGTGCCCCATCTCAGTGTCCCCTGAACTCTTTATTTGCCTAATTTATATATATATATATGAGATATATAAATATATATAAAATAGCTATTTTGCTTAAATTTCTACAGTATGTAAAAGTGAAAAAATGATGAAGACGGGTGCACCTGTCTGAGTTTGGCCCTCATGTGAGCTGTGCCCTTCCCTCTCCTCATGCCCCCTTCCAGCGGCTTCTGCCAACCATGGGGGGCTGGACCACCATGGCCACTGACCCAGCCCCTCAGAATCCCACACTCCAATCCTTTCCATTTCAGTTTAGTCCTAAAAGTTCATCACAGGGTCTTTCTTTCTACTCCAGGACTGGTTTTGTTTTTATATATATAAAAAAAAAAAGTGAAAACACCAATGTGTGAAATGCCTTACAATGCCCACTGGAGAGGCGGGGCGGGGTGGGGCAGGATGGCCCCACTGGGGCTCCTACAGAGCTGTGGAATGTACCTCTCCCCAACACTGTTTTGTTAGCGAGCACCTTTTGACCAGTAATAAAAAACCTTGGCTTTGGAGTTTTCCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184792:ENST00000332585:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.664 A=NA C2=0.022
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(20.4=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(8.6=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTTCTCAGAGCTGGCCCT
R:
CTTCTCAAACCACAGTGGCGT
Band lengths:
253-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development