MmuINT0113577 @ mm10
Intron Retention
Gene
ENSMUSG00000024687 | Osbp
Description
oxysterol binding protein [Source:MGI Symbol;Acc:MGI:97447]
Coordinates
chr19:11991595-11994105:+
Coord C1 exon
chr19:11991595-11991815
Coord A exon
chr19:11991816-11991899
Coord C2 exon
chr19:11991900-11994105
Length
84 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACA
5' ss Score
4.87
3' ss Seq
TTCATTCTCTTTCCTTGTAGGCA
3' ss Score
11.13
Exon sequences
Seq C1 exon
GAAGAATGCAGAGAACATGTACTACTTCTCAGAGCTTGCCCTCACTCTCAATGCCTGGGAAGGTGGCACTGCTCCCACGGACAGCCGGCTGCGGCCCGACCAGAGACTCATGGAAAACGGGCGTTGGGATGAAGCAAATGCTGAGAAGCAGCGCCTGGAGGAGAAACAGCGGCTTTCCAGGAAGAAGAGAGAAGCAGAAGCTGCGAAAGCCACGGAAGATG
Seq A exon
GTAACAAGCCTGTCCCCTGCTCGGATTTCTTGATGTGTGGTGGGTGTCAGCTCTAACCTTGCTTTTCATTCTCTTTCCTTGTAG
Seq C2 exon
GCACACCACATGACCCCTATAAAGCACTGTGGTTTGAGCGGAAGAAGGACCCTGTCACCAGGGAGCTAACCCATATTTATAGTGGCGAGTACTGGGAATGTAAGGAAAAGCAGGACTGGGGTTCTTGCCCAGATATTTTCTGAAGCAGCTGTAACTCAAAGGAAGAGGGCTGATCGGAGAAGACGGCAGAGGATGTGCGGGAAGGCTGGCAGTTGGGACTCTTACCGAGTGCTTTCCTCAAATTTGTCTGTCTTAACCAATCACTTTTTCCAAATCAATCACCAGAAGCAGACACCCGTGGTGGTGATTGGCTGGTTGCCTTAGCTGATTGACGCTGAAATCGACGTAGTAGATGCCCATGTTTGTAAGGGAGTGGTTTAGTGGCTGGAAGTTAGTGTTCCTCTACATCTCAAAGGCAAGTAAGTGTGCTTCCCTCTCGGCCTCATTGAGATGATGTCATTGACCCTCACCTGTGTCCTGCTCAGCCAAGATCTGCATAAGATTGGGATTCAGGAGCATTTTGGTGCTGTTCAGAGCAAGAACTGATTTTAAAGTTCCTTTAAAAAGAAACACATAAGATTTACCCAGCAGAGGCATCACGCCTAGGTCTCAGTGTATGAAGTGTACTCACACGTGGGATTGCTGTAACAGGTCGTCGCGTGTAGATAACTAAGGCTTTGGAGCATCTGCAGGAGAGAGTGTTCTCTAGGGCTTGAATATTGAATTATGTTCTTGGAGATTTTATCTTCACTTGCATACAATTCCCCTCTGCGGTTTTGTCTACTTTGACAGCAACCAGGGGCCTCCTTGGTCGTTGATAAGAGGGTCACACGCTCCTCATAAAGGGGTTTTATGGACTCCCTCAGGTGGAGAACCTCTGCAAACACAGGCAGGGTGGGAGAAGACTGCTAGCCACTTGTACCTTCCCAGTCCCTCCTCATCCGTCTTTCGTTGCCTTTCTGGCTTCTGTTTCCTGGCACAGTACCATTTTGAGTTTGTGCCACAGTCTGGAGCAAAACATTGCCTGACCCATTCTGTATACTTCAGAATCTTAGAGAAGTTCCTCTGCAACAAATGTTTTCATCTTGAAAGTCCCAGTAGAATGGAGCCACTTCTGAAATAATGTGTTAAATCATCTGTATATTATATATATATATATATATATGTAGAGAAAATCTAATTTTTTCCCCCTTTCCCATGAAGAATCTTGGTTTTTTTATATCACCTGTCTCCCTGGGACTCTCTCAAGTGCGCGTTAATATGGGTTGGTGCCTCTGCTTTCCATGTTTGAGGGACATTGCAACCCCAAGCAGGGTCATGTGTGGCAGTTGCTGAGCAGGGACAAGGAGGAAGGTTTTTGTGCCTACCCTGCGGCTGCCTCAGCTCGGCTTTGCCGATCACACGTGGCTCTTGGAAAGGAAGTCCTGGTCTTTTTCCTGCCTCAGTTTCCTTCCCTAGGAGGCGTACGGGTAGAAAGTCAAGAGGGTGATTTCTAGCTTCCTTATGTCCCAGCTCAGGCTAAATCCCAAAAACGTTTCCTTCCAAGGATGAGAGCTAAGAGCGCTCGTGCTCTGTGGGAGCTGCTCCTGCTGGCACTGGCACCCTCCCTTTTTCTTTATTAGTTCTAGTTTCCTGTTCAGAAATGTAGCCCTTGTGCAACCCACCCTTGGTTGAGGGTCATAAATTGAGGTGCCTTCCTTGTGTACTTTTTGTTAGTGTTTTTGTTTTTGTTCCTTAACTGTTGAGCCTCAGCCAGTGTGGGTCCTTGGGGAAAATAACCATTCCAGAGGAAGCTATCCCTCCAGGGAAATTGGATTTTACTGGGTAAATTAGTATTTTCAGTCCGTTCCCACTGACTCTCCTTCCTTAGATAAAATGATCAAAGATTGAGCACTAGGGAATTTCCTCCTAAGAAGGCTTCCCCAGCACAAGGGGTTACTCCAGGGAGGCCCATAAAATGGGCGCCGTCTCGGAGGCTTTGGATAGAATGGAAATTTCCCAAGGAACCTCTGTGCTTTCCCCTTTCCCTCTATCTGCACTACATTTCTAGCTTGATTCCCAGATCCCTGCTAATGGAAGAAGCTTAGAAGTCCTGAAGATGGAATAAAGTCACATGAAAGCAAAATAAGACTATATATATATTTTCAGTTTTTTTGCCTTATTGCTTTTTTTCAAAAAAAAAAAACTACTAAATTAAATAATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024687:ENSMUST00000025590:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.693 A=NA C2=0.213
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(19.6=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(8.8=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGACCAGAGACTCATGGAA
R:
CCTTCTTCCGCTCAAACCACA
Band lengths:
175-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types