GgaINT1020401 @ galGal4
Intron Retention
Gene
ENSGALG00000027392 | OSBP
Description
oxysterol binding protein [Source:HGNC Symbol;Acc:HGNC:8503]
Coordinates
chr5:505801-506770:+
Coord C1 exon
chr5:505801-506021
Coord A exon
chr5:506022-506090
Coord C2 exon
chr5:506091-506770
Length
69 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
3' ss Seq
GAGCCCCGCTGCGCCCGCAGGCA
3' ss Score
7.31
Exon sequences
Seq C1 exon
GAAGTACGCAGAGAACATGTACTACTTCTCGGAGCTGGCGCTGACGCTCAACGCCCCCGAAAGCGGCACGGCGCCCACCGACAGCCGCCGGCGCCCCGACCAGCGCCTGATGGAGAACGGCCGCTGGGACGAGGCCAACGCCGAGAAGCAGCGCCTGGAGGAGAAGCAGCGCCTGGCCCGCAAGCGCCGCGAGGCCGAGGCTGCCCGCGCCACTGAGGACG
Seq A exon
GTAAGGAGGGAGCGGGGGACCCCCGAGCCCACCCCGACCCCGCGGCGCTGAGCCCCGCTGCGCCCGCAG
Seq C2 exon
GCACCCCGTACGACCCCTACAAGCCGCTGTGGTTCGAGCGCAAGAAGGACCCAGTCACCCAGGAGCTGGCGCACGTCTACAGGGGGGGTTACTGGGAGAGCAAGGAGAAGCAGGACTGGAGCGGGTGCCCGGACATTTTCTGAGCTCGCCGTGCTGTCGGCACCCACCCGCCCACCGGGGTTGCCTTAGCCCATAGCCACACTGACCTTGATGCCGGGGTGGGGAGCGGGAGCCAAGCTGGCCCCCCCGGCCCCTGGAGCTCCCCCCCCCTCTGCCCTCATACGTGCACTCGGCCCCAGTGCCCTGGAGCGGGAGCGGCTCCCAGGGAGTGCATCGGGGCGAGCCCAAGGCTGGCCTTGGTCTCTCTTCCCCCACCCCGTTATTTCAGCCCCCTGCCAGGCATTCGGGTTCTCTGGGGGGCCGGGGGCCGGGCTCACTCGCCCCACAGTGGTTATGATGTAGGGAGCTGTGTTGGGGGAGGGGGGGCACCCTCTCCGTGCTTGCCCCGGTGCCCCCAGCACGGTGCCTTCCTCCTAGGGCATTTGGGGCGGCGGGGGCATCGCAGCGGGGCAGGGACCCCTCCTCCATTCCCCCACACCCTAAACACTACAGCGGCCTGAGGATGGTGGGGGAGGGGGGAGGGAACTCTGCGGGGCTGAGCTGACCCCGTGGATGGGGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027392:ENSGALT00000042982:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.760 A=NA C2=0.106
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(19.6=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(8.8=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCGCCTGATGGAGAACG
R:
CTGGGTGACTGGGTCCTTCTT
Band lengths:
183-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]