RnoINT0105679 @ rn6
Intron Retention
Gene
ENSRNOG00000021057 | Osbp
Description
oxysterol binding protein [Source:RGD Symbol;Acc:1308069]
Coordinates
chr1:228422819-228425361:+
Coord C1 exon
chr1:228422819-228423039
Coord A exon
chr1:228423040-228423121
Coord C2 exon
chr1:228423122-228425361
Length
82 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATG
5' ss Score
5.46
3' ss Seq
TTCATTTTCTTCCCATTTAGGCA
3' ss Score
10.04
Exon sequences
Seq C1 exon
GAAGAATGCAGAAAACATGTACTACTTCTCAGAGCTTGCGCTCACTCTCAATGCCTGGGAAGGTGGCACTGCTCCTACAGACAGCCGGCTGCGGCCTGACCAGAGACTGATGGAAAATGGGCGCTGGGATGAAGCAAATGCTGAGAAGCAGCGTCTGGAGGAAAAACAGCGACTTTCTAGGAAGAAGAGAGAAGCAGAAGCTATGAAAGCCACAGAAGATG
Seq A exon
GTAATGACCTGTCCCCTGCTCTGATTTTTGATGTGTGGTATGTGTCAGCTCTAATCTTGCTTTTCATTTTCTTCCCATTTAG
Seq C2 exon
GCACACCATATGACCCCTATAAAGCACTGTGGTTTGAGCGGAAGAAGGACCCTGTCACCAAGGAGCTAACCCATGTTTATAGGGGCGAGTACTGGGAATGTAAGGAAAAGCAGGACTGGGGTTCTTGCCCAGACATTTTCTGAAGCAGCTGTAACTCAAAGGAAGAGGGCTGATCGGAGAAGACGGCAGAGGATGTCCGTGAAGGCTGGCAGCTGGGACTCTTACCAAGTGCTTTCCTCAAATTTGTCTGTCTTAACCAATCACTTTTTCCAAATCAATCACCAGAAGCAGACACCCATGGTGGTGATTGGCTGGTTGCCTTAGCTGATTGATGCTGAAATCGACGTAGTAGATACCCATGTGTATAAGGGAGAGGTTTAGTGGCTGAAAGTTAGTGTTATTCTACATCTGCAAAGGCAAGTAAGTGTTCTCCCTCTGCCTCATATGAGATGGTGTCATCCACCCTTACCTTGTAGTATCCTGCCCAGCCAAGATCTGCATACGATTGTGATTCATGAGCATTTGGTGCTGTTCAGAGCAAGAACTGATTTTAAAGTTCCTTTCAAAAGAAACACGTAAGATTTAACCAGCAGAGGCATCGTGCACAGGTCTCAATGTTAGGAAATGTACTCCCACGTGGGCTTGGTTTAACAGGGCATCGTGTGGTAACTAAGGTTTTGGAGCATCTGCAGGAAAGATTGTTCTCTAGGGCTTGAGTATTGAGTTACTTTCCGGGAGACTTTACCTTCACTTGCATTCAGTACCCTCTGTGTTCTGTCTGCTTTGACAGCAACCAGAGGCCTCTGTGGTGGTTGATAAGAGGGTGACACTATCCTCAGAAAGGGGTTTATGGACTCCCTCAGGTGGAGAACCTCTGAGAACACAGGCAGGGTGGAAGAAGACTGCTACTCCTTGTACCTTCCCAGTCCCTCCTTGTCCTGTCTCTCATTGCCTTTCTGGCTTCTCTTTCCTGGCACAATGCCATTTGAGTTTGTGCCACAGTCTGGAGCAAACATTGCCTGACCCATTCTGCACACTTCAGAATATGGAAGAAGTTTCTCTGCAACAGATGTTTTCATCTTGGAAGTCCCAGTAGAATGGAGCCACTTCTGGAATAATGTGTTCAATCATCTGTATATTATATATATATATATGTGTGTGTGGAGAGAAAATCTAATTTTTTTTTTTTTTTTGGTTCTCCCCTTTCTCATGAAGAATCTTGGTTTTTTAATATCACCTGTCTCCTGGGACTCTCAAATGCGCGTTAATATGGGTTGGTGCACCTCTGCTTTCCATGTTTGAGGGGCGTTGCAGCCCCAGGCAGGGTCATGTGTGGCAGTTGCTGAACAGGGATGAGGAGAAGGGTTTTGTCACCTACCTGCTGCTGCCTCAGCTCAGCTTTTCTGATCACATGCGGCTCTTGGAAAGGAAGTCCTAGTCTTTTTCCTGCCTCAGTTTCCTTCCCTAGGAGGAGTACGGGTAGAAAGTCAAGAGGGTGATTTCTAGCTTCCTTATATCCCAGCCAGCTCAGGCTAAATCCCAAAAGAATTTTCTTCTAAGGATGTGAGCTAAGAGCCCTCATGCCCTGTGGGAACTGCTCCTGCTGGCGCTGGCATCCTTCAGTTTTTCTTTATGAGTTCTAGTGTCCTGTTCAGAAATATAACCCTTGTGCAACCCACTCTTGGTTGAGGGTCATAAATTGAGGTGCCTTCCTTGTGTACTTTTTGTTAGTGTTTTTGTTTTTGTTCCTTAACTGTTGAGCCTCAGCCAGTGTGGGTCCTTGGGGAAAATACCATTCCAGAGGACGCTATCCCTCCAGGGAAATTGGATTTTACTGGGTAAATTAGTATTCTCAGTCCTTCCCTACCGGCTCTCCTTCCCTAGATAAAAAATGATCAAAGAATGAGCACTAGGGAATTTCCTCCTAAGAAGACTTTCCCCAGCACAAGGGGTTACTCCAGGGAGGCCCATAAAATGGGCACCATCTCTGGAGGCTTTGGATAGAGTGGAAATTTCCCAAGGAACCTCCTTGCTTTAGCCCCTTCCCCTCTATCTGCACTACATTTCTAGCTTGATTTCCCAGATCCCTGCTAACGGAAGAAGCTTAGAAGTCCTGAAGATGGAATAAAGTCACATGAAAGCAAAATAAGACTATATATATATCTATATATATTTTCAGTTTTTTTGCCTTATTGCTTTTTTTCAAAAAAAAAAACTACTAAATTAAATAATTTTTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021057:ENSRNOT00000065411:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(19.6=100)
A:
NA
C2:
PF0123713=Oxysterol_BP=PD(8.8=68.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGCAGCGTCTGGAGGAAAA
R:
CATTCCCAGTACTCGCCCCTA
Band lengths:
177-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]